Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A944G61 Lonicera japonica HOM05D001463 ORTHO05D001282 5.5e-53 210.7 105 100.0
Lj1A946T36 Lonicera japonica HOM05D001463 ORTHO05D001282 1.2e-52 209.5 105 99.0
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 1.3e-25 119.8 114 57.0
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 1.1e-24 116.7 113 57.5
Actinidia02381 Actinidia chinensis HOM05D001463 ORTHO05D001282 1.4e-24 116.3 96 66.7
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 5.9e-23 110.9 108 56.5
Hma1.2p1_0026F.1_g016620 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 1.0e-19 100.1 96 58.3
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 1.4e-19 99.8 102 56.9
HanXRQChr07g0202091 Helianthus annuus HOM05D001463 ORTHO05D001282 1.8e-19 99.4 103 55.3
DCAR_011755 Daucus carota HOM05D001463 ORTHO05D001282 1.5e-18 96.3 120 50.0
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 2.0e-18 95.9 112 50.9
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 3.4e-18 95.1 103 54.4
ECA238G2806 Erigeron canadensis HOM05D001463 ORTHO05D001282 2.2e-17 92.4 110 51.8
HanXRQChr07g0202081 Helianthus annuus HOM05D001463 ORTHO05D001282 2.2e-17 92.4 104 54.8
Lsat_1_v5_gn_2_117121 Lactuca sativa HOM05D001463 ORTHO05D001282 3.7e-17 91.7 108 50.0
Peaxi162Scf00164g01525 Petunia axillaris HOM05D001463 ORTHO05D001282 1.1e-16 90.1 109 47.7
HanXRQChr14g0458451 Helianthus annuus HOM05D001463 ORTHO05D001282 3.1e-16 88.6 102 52.0
vmacro07015 Vaccinium macrocarpon HOM05D001463 ORTHO05D001282 4.1e-16 88.2 88 52.3
GSVIVG01016436001 Vitis vinifera HOM05D001463 ORTHO05D001282 9.1e-16 87.0 116 49.1
DCAR_024854 Daucus carota HOM05D001463 ORTHO05D001282 1.6e-15 86.3 115 47.0
Solyc05g052890.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 2.0e-15 85.9 104 50.0
PGSC0003DMG400027191 Solanum tuberosum HOM05D001463 ORTHO05D001282 3.5e-15 85.1 104 51.9
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 1.0e-14 83.6 103 50.5
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 2.9e-14 82.0 110 50.0
Solyc05g052880.4 Solanum lycopersicum HOM05D001463 ORTHO05D001282 2.9e-14 82.0 105 50.5
Sopen05g031400 Solanum pennellii HOM05D001463 ORTHO05D001282 6.5e-14 80.9 105 51.4
Peaxi162Scf00140g01313 Petunia axillaris HOM05D001463 ORTHO05D001282 1.5e-13 79.7 111 46.8
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.9e-13 79.3 108 49.1
Nitab4.5_0000647g0040 Nicotiana tabacum HOM05D001463 ORTHO05D001282 4.2e-13 78.2 103 46.6
CSS0007705 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 7.2e-13 77.4 60 61.7
Ciclev10033996m.g Citrus clementina HOM05D001463 ORTHO05D001282 7.2e-13 77.4 96 51.0
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 9.5e-13 77.0 110 47.3
HanXRQChr09g0246971 Helianthus annuus HOM05D001463 ORTHO05D001282 1.6e-12 76.3 99 50.5
Nn2g13529 Nelumbo nucifera HOM05D001463 ORTHO05D001282 2.7e-12 75.5 104 44.2
Eucgr.J00967 Eucalyptus grandis HOM05D001463 ORTHO05D001282 6.1e-12 74.3 120 45.8
TAR623G0111 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.4e-11 73.2 116 43.1
Cpa.g.sc19.255 Carica papaya HOM05D001463 ORTHO05D001282 3.0e-11 72.0 98 50.0
Dinv37114 Davidia involucrata HOM05D001463 ORTHO05D001282 4.0e-11 71.6 114 40.4
Potri.008G061700 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.0e-11 71.6 109 45.9
GSVIVG01034066001 Vitis vinifera HOM05D001463 ORTHO05D001282 4.0e-11 71.6 111 40.5
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 5.2e-11 71.2 103 45.6
TAR369G0036 Trochodendron aralioides HOM05D001463 ORTHO05D001282 5.2e-11 71.2 120 42.5
DCAR_027565 Daucus carota HOM05D001463 ORTHO05D001282 1.2e-10 70.1 114 42.1
Lalb_Chr18g0052921 Lupinus albus HOM05D001463 ORTHO05D001282 1.2e-10 70.1 100 45.0
Duzib106G1623 Durio zibethinus HOM05D001463 ORTHO05D001282 2.0e-10 69.3 103 49.5
ECA232G2252 Erigeron canadensis HOM05D001463 ORTHO05D001282 2.0e-10 69.3 99 42.4
Nitab4.5_0006999g0040 Nicotiana tabacum HOM05D001463 ORTHO05D001282 2.0e-10 69.3 102 45.1
Sc10g0001920 Simmondsia chinensis HOM05D001463 ORTHO05D001282 2.0e-10 69.3 109 41.3
Actinidia02902 Actinidia chinensis HOM05D001463 ORTHO05D001282 2.6e-10 68.9 74 48.6
CSS0026065 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 2.6e-10 68.9 116 38.8
PGR044G2554 Punica granatum HOM05D001463 ORTHO05D001282 2.6e-10 68.9 100 45.0
CiPaw.02G188100 Carya illinoinensis HOM05D001463 ORTHO05D001282 3.4e-10 68.6 118 41.5
Sabra08G0045300 Salix brachista HOM05D001463 ORTHO05D001282 3.4e-10 68.6 109 45.0
MD01G1141700 Malus domestica HOM05D001463 ORTHO05D001282 4.4e-10 68.2 113 42.5
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 4.4e-10 68.2 112 43.8
Sed0022748 Sechium edule HOM05D001463 ORTHO05D001282 4.4e-10 68.2 106 45.3
Eucgr.B02296 Eucalyptus grandis HOM05D001463 ORTHO05D001282 5.7e-10 67.8 109 40.4
FvH4_3g37190 Fragaria vesca HOM05D001463 ORTHO05D001282 9.8e-10 67.0 115 43.5
Sopen05g031390 Solanum pennellii HOM05D001463 ORTHO05D001282 9.8e-10 67.0 87 49.4
MD07G1207300 Malus domestica HOM05D001463 ORTHO05D001282 1.3e-09 66.6 114 43.0
MELO3C026564.2 Cucumis melo HOM05D001463 ORTHO05D001282 2.2e-09 65.9 107 45.8
FAN16G2865 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.2e-09 65.9 113 43.4
Glyma.02G252500 Glycine max HOM05D001463 ORTHO05D001282 2.2e-09 65.9 102 43.1
HanXRQChr07g0202041 Helianthus annuus HOM05D001463 ORTHO05D001282 2.2e-09 65.9 95 44.2
CSS0026922 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 2.8e-09 65.5 112 37.5
Duzib106G0892 Durio zibethinus HOM05D001463 ORTHO05D001282 3.7e-09 65.1 103 48.5
Lj6g0014007 Lotus japonicus HOM05D001463 ORTHO05D001282 3.7e-09 65.1 106 43.4
CANSAT35G0720 Cannabis sativa HOM05D001463 ORTHO05D001282 4.9e-09 64.7 110 38.2
MSTRG.8288 Avicennia marina HOM05D001463 ORTHO05D001282 6.3e-09 64.3 109 45.9
Ciclev10029407m.g Citrus clementina HOM05D001463 ORTHO05D001282 6.3e-09 64.3 112 39.3
Hma1.2p1_0671F.1_g200570 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 6.3e-09 64.3 110 43.6
MSTRG.5625 Avicennia marina HOM05D001463 ORTHO05D001282 8.3e-09 63.9 100 38.0
CiPaw.10G149400 Carya illinoinensis HOM05D001463 ORTHO05D001282 8.3e-09 63.9 109 42.2
CsaV3_5G008550 Cucumis sativus L. HOM05D001463 ORTHO05D001282 8.3e-09 63.9 107 43.0
Sed0003709 Sechium edule HOM05D001463 ORTHO05D001282 8.3e-09 63.9 106 43.4
VMungo1383G2188 Vigna mungo HOM05D001463 ORTHO05D001282 8.3e-09 63.9 106 41.5
ClCG07G003740 Citrullus lanatus HOM05D001463 ORTHO05D001282 1.1e-08 63.5 110 40.9
FAN25G3555 Fragaria x ananassa HOM05D001463 ORTHO05D001282 1.4e-08 63.2 110 42.7
Prupe.6G067400 Prunus persica HOM05D001463 ORTHO05D001282 1.8e-08 62.8 111 40.5
Glyma.18G033302 Glycine max HOM05D001463 ORTHO05D001282 3.1e-08 62.0 105 39.0
RcHm_v2.0_Chr5g0066931 Rosa chinensis HOM05D001463 ORTHO05D001282 3.1e-08 62.0 113 40.7
Atru.chr12.267 Acer truncatum HOM05D001463 ORTHO05D001282 4.1e-08 61.6 99 44.4
Potri.009G038300 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.1e-08 61.6 113 38.9
Potri.010G196400 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.1e-08 61.6 103 46.6
GSVIVG01024854001 Vitis vinifera HOM05D001463 ORTHO05D001282 4.1e-08 61.6 112 38.4
C09p74450 Brassica napus HOM05D001463 ORTHO05D001282 5.4e-08 61.2 102 36.3
CiPaw.14G063800 Carya illinoinensis HOM05D001463 ORTHO05D001282 5.4e-08 61.2 110 43.6
Haze_20884 Corylus avellana HOM05D001463 ORTHO05D001282 5.4e-08 61.2 109 40.4
Haze_20893 Corylus avellana HOM05D001463 ORTHO05D001282 5.4e-08 61.2 109 40.4
Nitab4.5_0002822g0010 Nicotiana tabacum HOM05D001463 ORTHO05D001282 5.4e-08 61.2 110 40.0
TPR.G34922 Trifolium pratense HOM05D001463 ORTHO05D001282 5.4e-08 61.2 114 37.7
FAN21G1105 Fragaria x ananassa HOM05D001463 ORTHO05D001282 7.0e-08 60.8 110 41.8
Gorai.011G273400 Gossypium raimondii HOM05D001463 ORTHO05D001282 7.0e-08 60.8 96 41.7
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 7.0e-08 60.8 99 42.4
Psat0s558g0040 Pisum sativum HOM05D001463 ORTHO05D001282 7.0e-08 60.8 113 38.1
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 9.2e-08 60.5 92 39.1
Gohir.D10G238356 Gossypium hirsutum HOM05D001463 ORTHO05D001282 9.2e-08 60.5 96 41.7
Nitab4.5_0006222g0010 Nicotiana tabacum HOM05D001463 ORTHO05D001282 9.2e-08 60.5 96 44.8
Phvul.001G238300 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 9.2e-08 60.5 101 41.6
MD03G1083100 Malus domestica HOM05D001463 ORTHO05D001282 1.2e-07 60.1 110 43.6
Ca_05913_v3 Cicer arietinum L. HOM05D001463 ORTHO05D001282 1.6e-07 59.7 104 42.3
Gohir.A10G225400 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.6e-07 59.7 96 40.6
BcaB05g22486 Brassica carinata HOM05D001463 ORTHO05D001282 2.0e-07 59.3 95 35.8
FAN11G0374 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.0e-07 59.3 110 40.9
MD11G1091200 Malus domestica HOM05D001463 ORTHO05D001282 2.0e-07 59.3 108 40.7
Sc11g0007610 Simmondsia chinensis HOM05D001463 ORTHO05D001282 2.0e-07 59.3 116 41.4
CAN.G945.14 Capsicum annuum HOM05D001463 ORTHO05D001282 3.5e-07 58.5 85 45.9
CsaV3_4G025610 Cucumis sativus L. HOM05D001463 ORTHO05D001282 3.5e-07 58.5 107 38.3
Duzib241G0001 Durio zibethinus HOM05D001463 ORTHO05D001282 3.5e-07 58.5 103 46.6
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 5.9e-07 57.8 95 35.8
COL.COLO4_18603 Corchorus olitorius HOM05D001463 ORTHO05D001282 5.9e-07 57.8 116 37.9
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 5.9e-07 57.8 95 35.8
Atru.chr8.2091 Acer truncatum HOM05D001463 ORTHO05D001282 7.7e-07 57.4 120 35.0
arahy.Tifrunner.gnm1.ann1.1EL8LN Arachis hypogaea HOM05D001463 ORTHO05D001282 7.7e-07 57.4 115 40.0
Ciclev10013013m.g Citrus clementina HOM05D001463 ORTHO05D001282 7.7e-07 57.4 115 35.7
Gohir.A05G302600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 7.7e-07 57.4 113 42.5
Lalb_Chr10g0104861 Lupinus albus HOM05D001463 ORTHO05D001282 7.7e-07 57.4 93 39.8
Manes.09G098500 Manihot esculenta HOM05D001463 ORTHO05D001282 7.7e-07 57.4 111 36.0
Psat2g037000 Pisum sativum HOM05D001463 ORTHO05D001282 7.7e-07 57.4 110 40.9
CiPaw.13G087300 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.0e-06 57.0 111 38.7
Potri.006G092400 Populus trichocarpa HOM05D001463 ORTHO05D001282 1.0e-06 57.0 114 38.6
TAR636G3077 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.0e-06 57.0 119 35.3
BcaC04g19809 Brassica carinata HOM05D001463 ORTHO05D001282 1.3e-06 56.6 95 35.8
C09p51470 Brassica napus HOM05D001463 ORTHO05D001282 1.3e-06 56.6 95 35.8
BolC9t58006H Brassica oleracea HOM05D001463 ORTHO05D001282 1.3e-06 56.6 95 35.8
Nitab4.5_0000647g0050 Nicotiana tabacum HOM05D001463 ORTHO05D001282 1.3e-06 56.6 93 46.2
THA.LOC104814892 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 1.3e-06 56.6 101 41.6
BcaB01g04602 Brassica carinata HOM05D001463 ORTHO05D001282 1.7e-06 56.2 95 36.8
CiPaw.09G201400 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.7e-06 56.2 109 37.6
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.7e-06 56.2 103 41.7
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.7e-06 56.2 101 44.6
Lj3g0027625 Lotus japonicus HOM05D001463 ORTHO05D001282 1.7e-06 56.2 113 38.9
Sp6g40420 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.7e-06 56.2 111 35.1
A10p16390 Brassica napus HOM05D001463 ORTHO05D001282 2.3e-06 55.8 95 35.8
BraA10t43726Z Brassica rapa HOM05D001463 ORTHO05D001282 2.3e-06 55.8 95 35.8
MELO3C003186.2 Cucumis melo HOM05D001463 ORTHO05D001282 2.3e-06 55.8 107 36.4
Gohir.A09G160900 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.3e-06 55.8 115 39.1
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.3e-06 55.8 104 43.3
AT5G02020 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 2.9e-06 55.5 101 32.7
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 2.9e-06 55.5 93 36.6
Cfa017303 Carpinus fangiana HOM05D001463 ORTHO05D001282 2.9e-06 55.5 109 37.6
Rhsim04G0163100 Rhododendron simsii HOM05D001463 ORTHO05D001282 2.9e-06 55.5 102 37.3
Sabra10G0151000 Salix brachista HOM05D001463 ORTHO05D001282 2.9e-06 55.5 105 40.0
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 3.8e-06 55.1 89 36.0
AUR62001723 Chenopodium quinoa HOM05D001463 ORTHO05D001282 3.8e-06 55.1 117 36.8
Gohir.D09G156600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 3.8e-06 55.1 114 38.6
Lalb_Chr01g0022791 Lupinus albus HOM05D001463 ORTHO05D001282 3.8e-06 55.1 116 36.2
MBI14_g02863_MAGBIO Magnolia biondii HOM05D001463 ORTHO05D001282 3.8e-06 55.1 121 38.8
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 3.8e-06 55.1 93 37.6
Sopen09g006220 Solanum pennellii HOM05D001463 ORTHO05D001282 3.8e-06 55.1 120 33.3
Duzib106G1514 Durio zibethinus HOM05D001463 ORTHO05D001282 5.0e-06 54.7 115 33.9
Psat5g124880 Pisum sativum HOM05D001463 ORTHO05D001282 5.0e-06 54.7 113 37.2
TWI15G0258 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 5.0e-06 54.7 61 49.2
Duzib168G0381 Durio zibethinus HOM05D001463 ORTHO05D001282 6.6e-06 54.3 112 36.6
Gohir.A11G328000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 6.6e-06 54.3 108 35.2
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 6.6e-06 54.3 117 31.6
arahy.Tifrunner.gnm1.ann1.9SAY5Z Arachis hypogaea HOM05D001463 ORTHO05D001282 8.6e-06 53.9 115 39.1
CANSAT54G2006 Cannabis sativa HOM05D001463 ORTHO05D001282 8.6e-06 53.9 118 38.1
Eucgr.K03042 Eucalyptus grandis HOM05D001463 ORTHO05D001282 8.6e-06 53.9 115 32.2
Gorai.006G178100 Gossypium raimondii HOM05D001463 ORTHO05D001282 8.6e-06 53.9 115 38.3
Thecc.05G028900 Theobroma cacao HOM05D001463 ORTHO05D001282 8.6e-06 53.9 113 35.4


User provided reference genes

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