Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 4.1e-273 944.1 476 100.0
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 2.4e-108 396.7 504 45.0
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.1e-105 387.9 503 43.9
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.4e-100 370.9 509 43.4
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 3.9e-98 362.8 509 43.0
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 7.4e-97 358.6 435 46.4
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 6.2e-96 355.5 496 42.9
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.1e-95 354.8 496 42.5
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.8e-95 354.0 501 42.9
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 1.4e-92 344.4 501 40.5
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.2e-92 342.8 412 47.6
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 7.1e-92 342.0 410 47.8
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.8e-90 337.4 422 45.7
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.5e-89 333.6 514 41.8
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 3.3e-89 333.2 488 40.6
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 1.3e-88 331.3 481 42.0
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 2.8e-88 330.1 390 45.6
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 1.4e-87 327.8 488 38.5
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.0e-85 321.6 489 40.7
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 1.3e-85 321.2 491 40.1
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 2.9e-85 320.1 509 39.5
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 5.0e-85 319.3 379 47.2
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 5.0e-85 319.3 452 41.6
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 8.5e-85 318.5 452 41.6
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 1.1e-84 318.2 511 39.7
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.4e-84 317.8 487 38.8
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 1.9e-84 317.4 410 44.4
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 7.2e-84 315.5 493 39.1
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 7.2e-84 315.5 479 41.1
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 9.3e-84 315.1 403 44.9
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.1e-83 313.9 442 43.2
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.6e-83 312.8 412 43.4
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 7.9e-83 312.0 427 43.8
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.0e-82 311.6 499 38.5
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.0e-82 311.6 376 45.5
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 1.3e-82 311.2 482 39.6
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 2.3e-82 310.5 488 41.0
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.3e-82 310.5 516 38.2
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 2.3e-82 310.5 489 38.7
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 3.0e-82 310.1 499 38.3
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 6.7e-82 308.9 490 38.6
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 8.7e-82 308.5 482 39.2
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 8.7e-82 308.5 486 38.3
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 1.1e-81 308.1 452 40.0
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 1.5e-81 307.8 474 40.5
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.9e-81 307.4 479 39.0
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 3.3e-81 306.6 480 39.6
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 4.3e-81 306.2 475 38.1
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 5.7e-81 305.8 509 38.9
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 7.4e-81 305.4 439 43.5
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 9.7e-81 305.1 502 39.4
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 1.6e-80 304.3 496 37.9
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 2.2e-80 303.9 393 44.0
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 2.2e-80 303.9 377 45.1
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 2.8e-80 303.5 402 43.0
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 6.3e-80 302.4 452 40.5
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 6.3e-80 302.4 457 41.8
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 1.4e-79 301.2 501 36.7
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.4e-79 301.2 347 47.3
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.8e-79 300.8 510 38.2
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 1.8e-79 300.8 480 39.0
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 4.1e-79 299.7 395 42.8
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 4.1e-79 299.7 410 43.2
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 6.9e-79 298.9 393 44.0
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 6.9e-79 298.9 393 43.3
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 1.5e-78 297.7 500 37.6
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 1.5e-78 297.7 502 38.2
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 2.0e-78 297.4 500 37.0
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 2.6e-78 297.0 488 38.9
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 2.6e-78 297.0 513 36.8
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 3.4e-78 296.6 506 38.1
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 3.4e-78 296.6 395 43.8
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 5.9e-78 295.8 497 39.8
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 5.9e-78 295.8 483 40.4
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 7.7e-78 295.4 379 44.6
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 1.3e-77 294.7 486 37.9
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 2.9e-77 293.5 488 37.1
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.9e-77 293.5 402 43.0
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 3.8e-77 293.1 362 45.3
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 8.5e-77 292.0 491 38.5
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 1.4e-76 291.2 504 36.9
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 1.9e-76 290.8 483 38.3
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 1.9e-76 290.8 483 38.5
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 2.5e-76 290.4 496 38.1
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 3.2e-76 290.0 475 37.1
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 4.2e-76 289.7 491 36.3
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 4.2e-76 289.7 490 36.9
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 5.5e-76 289.3 475 37.3
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 9.4e-76 288.5 417 40.3
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.2e-75 288.1 512 36.5
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 1.6e-75 287.7 475 37.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.1e-75 287.3 475 38.7
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 3.6e-75 286.6 476 38.2
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 6.1e-75 285.8 477 38.4
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 7.9e-75 285.4 512 36.7
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 1.4e-74 284.6 379 43.3
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 1.4e-74 284.6 403 40.2
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 1.8e-74 284.3 480 37.3
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 3.0e-74 283.5 490 35.3
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 5.1e-74 282.7 397 42.1
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 8.8e-74 282.0 475 37.5
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 1.1e-73 281.6 405 41.0
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 3.3e-73 280.0 476 37.4
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 3.3e-73 280.0 476 38.4
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 4.4e-73 279.6 406 41.4
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 5.7e-73 279.3 475 37.9
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 5.7e-73 279.3 475 36.6
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 7.4e-73 278.9 475 37.3
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 7.4e-73 278.9 499 35.5
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 9.7e-73 278.5 512 34.0
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 9.7e-73 278.5 484 37.6
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 9.7e-73 278.5 512 35.7
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 1.7e-72 277.7 499 38.1
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 2.2e-72 277.3 475 36.8
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.8e-72 276.9 499 37.7
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 8.2e-72 275.4 397 40.8
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 3.1e-71 273.5 504 34.3
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 4.5e-70 269.6 402 38.1
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.9e-70 269.2 408 40.4
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 7.7e-70 268.9 500 36.2
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 8.5e-69 265.4 286 49.3
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 3.2e-68 263.5 488 36.5
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 3.2e-68 263.5 497 36.0
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 1.2e-67 261.5 275 53.1
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 1.2e-67 261.5 364 41.5
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 3.6e-67 260.0 419 37.5
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 4.7e-67 259.6 492 35.2
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 6.1e-67 259.2 375 41.6
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 6.7e-66 255.8 490 35.5
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.6e-65 253.8 261 50.6
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 5.7e-65 252.7 508 34.3
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 8.2e-64 248.8 402 40.5
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 3.6e-59 233.4 480 35.2
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 3.6e-59 233.4 380 37.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 8.0e-59 232.3 257 47.1
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.1e-51 207.6 518 30.5
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-46 191.0 333 35.7
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 2.7e-46 190.7 285 40.7
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 1.0e-45 188.7 489 28.6
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 9.5e-44 182.2 440 31.1
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 9.2e-39 165.6 448 27.7
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 6.6e-37 159.5 382 30.1
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 1.5e-36 158.3 138 59.4
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.5e-36 158.3 254 37.4
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.5e-33 148.3 482 26.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 3.0e-29 134.0 189 41.8
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 8.9e-26 122.5 87 64.4
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.2e-25 122.1 275 34.2
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 5.4e-23 113.2 366 25.4
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.5e-20 105.1 87 59.8
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 1.9e-20 104.8 221 31.2
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 2.5e-20 104.4 147 40.1
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 1.3e-16 92.0 170 35.9
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 2.4e-15 87.8 277 27.8
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 9.2e-07 59.3 170 32.4


User provided reference genes

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