Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.0e-168 596.7 307 100.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 6.4e-118 427.9 308 74.7
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 7.1e-117 424.5 308 73.7
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.7e-116 422.5 307 73.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.6e-115 417.9 308 73.1
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 6.6e-115 417.9 241 90.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.6e-115 417.5 310 73.2
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.5e-114 416.8 308 72.7
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.5e-114 416.8 303 72.9
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.5e-114 416.0 308 73.1
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.3e-114 415.2 303 72.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-113 413.7 303 71.9
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.1e-113 412.9 303 73.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.1e-113 412.9 303 71.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.8e-113 412.5 303 71.9
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.7e-113 411.8 308 71.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 8.1e-113 411.0 300 72.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.1e-112 410.6 308 71.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.3e-112 409.5 308 71.8
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.3e-112 409.5 308 71.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.3e-112 409.5 303 71.3
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 5.2e-112 408.3 308 71.4
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 5.2e-112 408.3 308 71.1
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 6.8e-112 407.9 308 71.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.0e-111 406.4 308 70.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.0e-111 406.4 300 71.0
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.4e-111 405.2 308 70.5
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.8e-111 404.8 308 70.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.6e-111 404.4 308 71.8
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.6e-111 404.4 308 70.1
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 7.6e-111 404.4 303 70.6
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.3e-110 403.7 308 73.1
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.3e-110 403.7 303 70.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.9e-110 402.5 308 69.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.9e-110 401.7 304 71.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 8.4e-110 401.0 308 70.1
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-109 400.2 303 71.0
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.9e-109 399.8 308 70.8
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.9e-109 399.8 303 70.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.4e-109 399.4 303 70.6
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.4e-109 399.4 303 70.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 3.2e-109 399.1 303 70.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.1e-109 398.7 308 70.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.1e-109 398.7 308 70.5
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.4e-109 398.3 309 70.2
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.2e-109 397.5 303 70.3
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-108 396.4 303 70.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.1e-108 396.4 310 71.0
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.7e-108 396.0 308 68.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.5e-108 395.6 303 69.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.6e-108 395.2 307 68.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.0e-107 394.0 303 69.3
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.3e-107 393.7 291 72.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.7e-107 393.3 308 69.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.3e-107 392.9 307 68.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.0e-107 392.5 308 68.8
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.9e-107 392.1 309 71.2
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 5.1e-107 391.7 303 69.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.1e-106 390.6 306 69.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.9e-106 389.8 303 69.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.9e-106 389.8 316 68.4
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.5e-106 389.4 306 69.3
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.3e-106 389.0 308 69.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.3e-106 388.7 308 69.8
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.3e-106 388.7 299 69.9
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.6e-105 386.7 308 68.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.6e-105 386.7 308 69.2
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.1e-105 386.3 296 71.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.6e-105 385.6 308 68.8
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.6e-105 385.6 303 68.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-104 384.0 308 68.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.4e-104 383.6 303 67.3
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.8e-104 383.3 304 69.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.4e-104 382.9 308 68.2
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.0e-104 382.1 308 68.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.9e-104 380.9 291 69.1
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 8.9e-104 380.9 303 67.0
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.5e-103 380.2 305 66.2
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-103 379.4 306 67.6
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.6e-103 379.4 296 69.9
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-103 379.0 334 62.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.4e-103 378.6 308 68.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.2e-102 376.3 331 63.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.2e-102 376.3 308 68.2
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.2e-102 376.3 303 66.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.8e-102 375.6 298 68.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 6.4e-102 374.8 295 67.1
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 8.4e-102 374.4 309 68.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.1e-101 374.0 242 78.5
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.1e-101 374.0 291 68.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.2e-101 372.5 292 67.5
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.3e-101 370.9 302 66.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.2e-100 370.5 304 67.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 4.6e-100 368.6 308 65.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.7e-99 366.7 304 66.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.5e-98 363.6 307 65.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.3e-98 362.1 303 66.7
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 2.1e-97 359.8 319 63.3
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.8e-97 359.4 308 64.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.8e-97 359.4 308 64.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.1e-96 357.5 292 67.5
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.2e-95 354.0 311 62.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 7.6e-95 351.3 361 58.2
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-94 350.5 292 66.4
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-93 347.1 301 63.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 9.3e-93 344.4 304 62.2
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.2e-92 344.0 292 64.4
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.1e-92 343.2 304 63.2
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 4.6e-92 342.0 305 62.3
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.7e-91 340.1 304 61.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 6.6e-91 338.2 309 60.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-90 337.4 299 60.5
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-90 337.4 299 60.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 7.4e-90 334.7 306 61.4
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 9.6e-90 334.3 305 61.6
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.6e-90 334.3 305 62.0
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.1e-89 333.2 298 60.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.8e-89 332.8 304 61.8
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 2.8e-89 332.8 307 60.9
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.8e-89 332.8 307 60.9
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.1e-89 331.3 305 61.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.4e-88 329.7 304 61.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 9.0e-88 327.8 304 61.5
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.5e-87 327.0 318 59.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.0e-87 326.6 307 60.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.0e-87 326.6 304 60.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.6e-87 326.2 316 60.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 5.8e-87 325.1 304 60.9
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.8e-87 325.1 305 59.7
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 9.9e-87 324.3 268 66.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 9.9e-87 324.3 304 58.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.3e-86 323.9 298 60.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.7e-86 323.6 307 61.2
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.9e-86 322.0 304 60.5
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.4e-85 320.5 276 62.7
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.5e-84 315.8 304 60.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.6e-84 315.5 302 58.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.0e-83 314.3 306 58.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.3e-83 313.9 294 59.2
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.5e-82 309.7 226 73.0
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.8e-81 306.2 305 57.7
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 8.1e-81 304.7 306 55.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 6.9e-80 301.6 226 71.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-78 297.4 305 56.1
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-77 292.4 305 56.1
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 6.0e-76 288.5 304 54.3
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 6.0e-76 288.5 260 61.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.0e-75 287.7 305 55.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.8e-72 276.9 282 56.7
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 8.5e-70 268.1 232 63.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-64 249.6 181 72.4
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.8e-62 242.7 173 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.6e-36 156.4 237 44.3
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.7e-36 156.0 239 42.3
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 7.5e-34 148.7 221 43.9
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.3e-33 147.9 209 42.1
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.1e-32 144.8 111 69.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.4e-32 142.5 126 63.5
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-24 118.2 111 63.1
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-24 118.2 130 53.1
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-21 106.7 309 31.4
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.3e-21 106.3 126 52.4
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-18 96.7 91 56.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.1e-16 91.7 120 42.5
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 2.1e-12 77.4 194 34.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 4.0e-11 73.2 39 79.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.2e-11 72.8 60 60.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.5e-10 68.9 37 81.1
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 7.5e-10 68.9 43 69.8
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 3.7e-09 66.6 124 40.3


User provided reference genes

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