Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 6.8e-243 843.6 429 100.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.2e-202 709.9 427 83.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 5.8e-202 707.6 428 83.9
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.3e-198 695.7 427 82.2
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 5.1e-198 694.5 427 83.4
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 2.5e-197 692.2 428 81.5
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-197 691.8 428 83.2
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.1e-196 689.1 428 83.9
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.8e-196 688.7 427 82.9
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 4.8e-196 688.0 428 82.9
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 6.2e-196 687.6 427 81.3
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 8.2e-196 687.2 429 81.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.1e-195 686.8 429 82.8
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 3.1e-195 685.3 429 82.3
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 5.3e-195 684.5 435 81.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.9e-195 684.1 434 82.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.2e-194 683.3 427 81.5
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 2.0e-194 682.6 428 82.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.6e-194 682.2 431 81.0
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.4e-194 681.8 429 82.1
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.5e-194 681.4 429 81.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.7e-193 679.5 434 80.6
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 4.9e-193 677.9 432 80.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 4.9e-193 677.9 429 81.8
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.2e-192 675.2 432 80.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 4.2e-192 674.9 428 81.5
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.5e-192 674.5 427 81.0
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 7.1e-192 674.1 429 80.2
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.2e-191 673.3 435 80.5
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.1e-191 672.5 428 81.5
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 3.0e-190 668.7 427 81.3
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.1e-189 666.8 427 81.0
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 3.3e-189 665.2 429 81.4
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 3.3e-189 665.2 431 77.5
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 5.7e-189 664.5 427 80.6
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.4e-189 664.1 429 79.5
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.4e-189 664.1 429 79.5
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.8e-188 662.1 428 79.7
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 3.7e-188 661.8 427 79.2
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 6.3e-188 661.0 430 79.5
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.2e-188 660.6 457 76.6
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.4e-187 659.1 428 78.0
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.1e-187 658.7 427 79.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.1e-187 658.7 431 76.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 6.9e-187 657.5 426 78.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 6.9e-187 657.5 431 75.9
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.5e-186 656.4 429 79.0
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-186 656.0 431 75.9
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 5.9e-186 654.4 414 79.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 5.9e-186 654.4 429 78.3
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.7e-186 654.1 431 78.7
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-185 652.9 426 78.4
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.7e-185 652.9 427 79.6
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.7e-185 652.9 414 79.5
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.2e-185 652.5 427 77.8
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.2e-185 652.5 427 77.8
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.2e-185 652.5 427 77.8
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.2e-185 652.5 429 78.6
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 5.0e-185 651.4 427 78.0
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 5.0e-185 651.4 429 77.4
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.5e-185 651.0 431 77.3
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 6.5e-185 651.0 427 78.2
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 6.5e-185 651.0 427 78.5
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-185 651.0 427 76.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.5e-185 651.0 427 76.6
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-185 650.6 427 78.2
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-185 650.6 427 78.2
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 8.5e-185 650.6 427 78.2
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 8.5e-185 650.6 427 78.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 8.5e-185 650.6 431 77.0
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 8.5e-185 650.6 447 76.7
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.9e-184 649.4 427 78.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.5e-184 649.0 432 75.5
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-184 649.0 426 78.9
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 3.2e-184 648.7 427 78.0
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 3.2e-184 648.7 426 78.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.2e-184 648.7 427 78.2
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.2e-184 648.7 427 78.2
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.2e-184 648.3 427 75.9
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.5e-184 647.9 426 78.6
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 7.2e-184 647.5 430 77.2
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.4e-184 647.1 428 77.6
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.2e-183 646.7 427 77.8
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.6e-183 646.4 428 77.6
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.6e-183 646.4 430 78.6
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 2.1e-183 646.0 427 77.5
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.1e-183 646.0 427 77.5
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 2.7e-183 645.6 428 78.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.6e-183 645.2 427 77.3
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 6.1e-183 644.4 427 77.3
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 6.1e-183 644.4 431 76.6
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.1e-183 644.4 426 78.4
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.0e-182 643.7 427 77.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.8e-182 642.9 426 77.7
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.3e-182 642.5 428 77.3
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 2.0e-181 639.4 438 74.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 4.3e-181 638.3 430 76.3
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.7e-181 637.9 427 76.6
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 7.4e-181 637.5 427 78.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 7.4e-181 637.5 504 68.1
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.3e-180 636.7 438 74.7
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 2.2e-180 636.0 429 76.5
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 2.2e-180 636.0 424 77.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.8e-180 635.6 426 76.5
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 3.7e-180 635.2 442 75.8
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.7e-180 635.2 380 81.8
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 3.7e-180 635.2 426 75.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 6.3e-180 634.4 429 74.8
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 8.2e-180 634.0 432 75.0
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.8e-179 632.9 542 63.7
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 6.9e-179 630.9 435 74.9
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.0e-178 629.4 431 73.1
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 3.4e-178 628.6 426 76.1
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-177 626.3 430 75.3
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.2e-177 625.9 465 72.7
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 6.5e-177 624.4 475 69.7
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-176 623.6 431 72.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.4e-176 623.2 430 74.9
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.0e-174 615.5 426 76.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 9.7e-173 610.5 434 72.6
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.7e-172 609.8 432 72.7
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.8e-172 609.0 435 72.2
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.4e-171 606.7 381 79.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 5.3e-171 604.7 394 76.4
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.2e-170 603.6 423 75.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.6e-170 602.4 430 70.9
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.6e-167 592.0 382 75.9
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.4e-166 590.1 415 72.8
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 3.0e-166 589.0 380 77.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.3e-165 585.5 429 72.3
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 6.3e-164 581.3 388 73.7
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-162 576.6 425 71.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.8e-158 563.1 364 78.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 2.3e-158 562.8 352 79.8
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 5.3e-155 551.6 343 83.7
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.3e-153 547.0 364 76.9
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.9e-153 545.8 332 84.6
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 6.5e-153 544.7 428 68.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.8e-148 529.3 335 80.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 8.3e-148 527.7 334 82.0
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.3e-145 520.4 390 68.7
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.8e-143 512.7 364 73.1
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 9.8e-141 504.2 430 64.7
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.2e-140 503.1 371 69.3
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 2.0e-138 496.5 375 67.5
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.5e-136 490.3 365 69.3
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 5.8e-133 478.4 344 71.5
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.9e-120 436.8 329 66.6
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 9.5e-120 434.5 261 82.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.1e-115 419.1 293 72.0
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 7.6e-109 398.3 424 54.7
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 7.6e-109 398.3 255 80.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.8e-95 353.2 228 80.7
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.3e-92 344.4 233 75.1
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.8e-89 334.0 244 68.0
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.0e-81 308.1 181 87.3
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 2.1e-79 300.4 355 49.0
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 8.2e-79 298.5 365 44.7
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.0e-76 289.3 183 78.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.0e-69 267.3 155 80.0
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-64 250.0 186 66.1
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-64 250.0 186 66.1
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.5e-56 224.6 146 78.1
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.1e-54 216.9 221 58.8
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.7e-53 212.2 244 54.5
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.3e-41 174.1 145 62.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.1e-38 165.2 99 80.8
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.8e-33 147.9 297 39.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.6e-28 129.4 220 45.5
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 2.0e-24 117.9 82 70.7
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.5e-21 107.1 60 90.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 3.6e-18 97.1 82 64.6
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.8e-17 94.7 75 70.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 5.2e-17 93.2 59 79.7
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 5.2e-17 93.2 59 79.7
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-16 90.5 90 53.3
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.9e-15 87.4 46 84.8
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 3.3e-11 73.9 44 84.1
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.6e-10 71.6 48 72.9
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 4.0e-09 67.0 135 36.3
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 5.2e-09 66.6 43 76.7
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.8e-08 63.2 72 48.6
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.7e-07 61.6 72 50.0
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.2e-07 61.2 72 50.0
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 3.2e-06 57.4 35 77.1


User provided reference genes

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