Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.8e-297 1025.4 601 100.0
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.8e-114 416.4 699 45.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.6e-93 347.8 681 42.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.8e-87 327.8 676 42.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-84 318.5 705 39.9
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.7e-80 303.9 696 38.4
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.4e-75 287.0 681 35.4
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.9e-73 281.2 702 36.9
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.1e-68 263.8 705 38.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 4.5e-67 260.0 703 38.0
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 5.9e-67 259.6 686 36.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.0e-66 258.8 654 37.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 9.4e-65 252.3 701 37.9
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.0e-63 248.8 508 37.4
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.0e-63 247.3 340 46.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.0e-63 247.3 660 37.7
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.1e-62 245.4 698 35.2
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 5.7e-62 243.0 680 36.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 7.4e-62 242.7 684 36.1
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.7e-61 241.5 684 36.0
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 3.7e-61 240.4 696 33.3
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.0e-59 234.6 699 35.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.2e-58 231.1 698 38.1
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 8.0e-56 222.6 724 33.8
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.4e-55 221.9 662 34.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.2e-54 218.8 410 39.3
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.8e-53 214.2 696 32.2
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.6e-51 208.4 685 33.9
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.5e-51 207.2 699 33.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.2e-49 199.5 507 34.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-48 198.7 494 34.2
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.0e-47 195.7 699 33.0
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.3e-47 194.5 699 33.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.8e-47 193.0 699 33.8
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.8e-47 192.6 658 36.8
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 8.8e-47 192.6 692 32.8
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 2.0e-46 191.4 699 32.8
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.3e-45 188.7 496 35.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.7e-45 188.3 668 34.0
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 1.7e-45 188.3 759 31.6
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.2e-45 188.0 690 32.8
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.4e-44 184.5 699 32.6
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 4.1e-44 183.7 692 33.1
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 7.0e-44 183.0 699 31.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.0e-43 181.4 668 32.0
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 5.9e-43 179.9 697 35.0
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 2.3e-42 177.9 699 31.9
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.8e-42 177.2 700 31.4
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.9e-41 174.9 575 33.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.5e-41 174.5 690 31.0
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 2.1e-40 171.4 232 46.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.7e-37 161.8 674 28.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-37 161.4 654 32.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.8e-37 161.0 693 34.1
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.8e-36 158.3 633 30.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.1e-36 157.1 691 28.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 4.1e-36 157.1 494 32.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.2e-35 155.6 672 27.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.7e-35 154.5 688 30.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.5e-35 154.1 429 41.0
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.5e-35 153.7 688 30.5
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.0e-34 152.5 594 33.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.9e-34 151.0 671 30.3
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 8.6e-34 149.4 653 33.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 7.3e-33 146.4 586 32.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.3e-31 141.4 625 33.0
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 4.0e-31 140.6 585 32.6
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 8.9e-31 139.4 751 31.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.0e-30 138.3 617 31.0
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.6e-30 137.9 517 32.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-29 135.2 253 40.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.2e-29 134.8 605 31.9
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.9e-29 134.4 600 34.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 4.9e-29 133.7 281 38.4
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 6.4e-29 133.3 658 30.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 8.3e-29 132.9 602 31.4
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.7e-27 127.9 498 33.7
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.6e-27 127.1 602 34.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.0e-27 126.7 500 38.2
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 7.8e-27 126.3 365 34.5
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.3e-26 125.6 469 30.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.3e-26 125.6 356 30.1
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.9e-26 124.0 385 31.9
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.5e-25 121.3 535 27.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 4.7e-24 117.1 500 37.2
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-23 115.9 600 31.0
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 4.0e-23 114.0 463 28.3
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.8e-23 113.2 536 27.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 6.8e-23 113.2 686 28.1
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.2e-22 112.5 536 27.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 9.2e-20 102.8 543 28.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 5.1e-18 97.1 642 27.4
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 5.1e-18 97.1 419 30.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 8.6e-18 96.3 438 29.2
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.1e-17 95.9 607 31.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 5.6e-17 93.6 408 29.9
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 9.5e-17 92.8 392 29.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.2e-16 92.4 365 29.9
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.1e-16 91.7 232 43.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 3.6e-16 90.9 603 29.7
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.7e-16 90.5 552 25.4
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 8.1e-16 89.7 388 29.4
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 5.2e-15 87.0 411 28.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 4.4e-14 84.0 421 27.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 5.8e-14 83.6 355 28.2
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.9e-13 81.3 400 26.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.9e-13 80.5 280 29.6
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 4.1e-12 77.4 362 27.9
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 7.1e-12 76.6 608 28.1
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.2e-11 75.9 291 28.9
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 2.3e-10 71.6 221 30.8
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.0e-10 71.2 517 24.4
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 6.6e-10 70.1 350 25.7
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.1e-09 69.3 350 25.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.3e-09 66.6 350 25.7
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 7.3e-09 66.6 350 25.7
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.7e-08 63.9 218 28.0
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.8e-07 62.0 610 32.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.0e-06 58.5 484 25.6
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 9.9e-06 56.2 423 29.1


User provided reference genes

Program Settings