Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.3e-158 561.6 278 100.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 3.4e-110 402.1 274 74.1
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.1e-108 397.1 270 72.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.2e-108 395.6 273 73.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.1e-107 392.9 274 72.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.0e-107 391.3 274 71.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.7e-106 389.8 277 71.1
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.9e-106 388.7 273 72.2
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 5.1e-106 388.3 278 68.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.5e-105 386.7 272 71.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.5e-105 386.0 273 71.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 9.6e-105 384.0 278 69.4
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 9.6e-105 384.0 278 70.1
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.8e-104 382.5 272 71.3
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 3.6e-104 382.1 277 69.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 2.4e-103 379.4 278 70.1
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.0e-103 378.6 278 68.7
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.5e-102 376.7 274 68.6
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 4.4e-102 375.2 273 69.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 9.9e-102 374.0 273 67.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 8.4e-101 370.9 274 66.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.4e-101 370.9 273 66.3
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.4e-101 370.9 277 69.0
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-100 370.2 273 66.7
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.3e-100 367.5 272 69.5
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.3e-100 367.5 278 67.3
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 9.3e-100 367.5 269 66.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.6e-99 366.7 273 66.7
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-99 366.3 284 65.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.1e-99 366.3 278 67.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-99 364.8 278 66.9
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 7.8e-99 364.4 278 65.8
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-98 363.6 278 65.8
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.3e-98 362.8 267 69.3
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.3e-98 362.8 284 65.1
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 2.3e-98 362.8 273 68.1
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 3.9e-98 362.1 274 65.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.1e-97 360.5 278 64.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 4.3e-97 358.6 278 63.7
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 5.6e-97 358.2 278 65.5
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 9.6e-97 357.5 274 64.6
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.6e-97 357.5 279 66.3
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.1e-96 356.3 279 64.5
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.1e-96 356.3 279 64.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 6.2e-96 354.8 326 58.6
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 8.1e-96 354.4 278 64.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-95 354.0 275 63.3
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.1e-95 352.4 278 62.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.1e-95 352.4 280 65.4
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 6.9e-95 351.3 271 66.1
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.2e-94 350.5 279 63.4
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-94 350.1 278 63.3
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.6e-94 349.4 267 64.8
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.5e-94 348.6 279 64.5
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 5.8e-94 348.2 276 63.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.3e-93 347.1 274 62.4
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.3e-93 347.1 272 64.3
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-92 343.6 264 65.2
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 7.1e-92 341.3 270 63.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-91 340.5 278 61.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.6e-91 340.1 284 62.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.3e-90 337.0 273 61.9
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.0e-90 335.9 273 62.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.9e-90 335.5 273 60.8
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 3.9e-90 335.5 271 64.9
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.1e-90 335.1 303 60.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 8.7e-90 334.3 284 60.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-89 334.0 277 61.4
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.5e-89 333.6 273 63.0
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.5e-89 333.6 272 60.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.3e-89 332.0 269 60.6
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 5.6e-89 331.6 278 61.5
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.4e-89 331.3 275 64.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.6e-88 330.1 268 59.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-88 330.1 268 59.7
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-88 330.1 268 59.3
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-88 330.1 291 59.1
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.7e-88 328.9 273 61.9
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-87 327.4 268 59.0
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.1e-87 327.4 277 61.4
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.8e-87 326.6 273 63.4
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.5e-86 322.0 286 57.7
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.2e-85 319.7 282 57.4
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.4e-85 318.2 279 57.7
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 6.4e-85 318.2 275 59.3
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.5e-84 316.2 278 57.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.6e-83 313.5 282 59.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.3e-82 309.7 273 59.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.3e-82 309.7 273 59.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.3e-82 309.7 273 59.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.3e-82 309.7 284 59.2
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.9e-81 306.6 277 58.1
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.9e-81 306.6 278 57.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 3.7e-80 302.4 280 56.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.7e-80 302.4 271 57.6
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-80 302.4 274 55.5
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.8e-79 300.1 268 58.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 3.1e-79 299.3 269 56.9
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 9.0e-79 297.7 271 55.7
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.5e-78 297.0 268 58.2
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 4.5e-78 295.4 272 55.9
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.8e-78 295.0 274 56.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.0e-77 294.3 274 56.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.8e-77 292.4 273 55.3
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.8e-77 292.4 273 55.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 4.9e-77 292.0 276 56.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.9e-77 292.0 268 56.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 6.5e-77 291.6 277 54.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.1e-76 290.8 271 55.0
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.4e-76 290.4 282 56.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.5e-76 289.7 275 54.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.2e-76 289.3 219 66.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.1e-75 286.6 312 51.0
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.1e-75 286.6 268 55.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.6e-75 285.4 279 52.0
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 6.0e-75 285.0 264 56.4
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 6.0e-75 285.0 241 59.8
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 7.9e-75 284.6 269 54.3
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-74 283.9 279 52.0
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.0e-74 282.7 279 51.6
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.0e-74 282.7 187 77.0
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.6e-72 276.9 275 54.5
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.6e-72 276.9 272 53.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.1e-71 272.7 275 53.5
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.1e-71 272.7 275 53.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 9.0e-71 271.2 252 56.3
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-70 270.8 193 71.5
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 7.7e-70 268.1 266 52.6
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 7.2e-68 261.5 233 60.5
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.7e-67 259.6 304 48.7
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 6.1e-67 258.5 280 51.1
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.4e-66 257.3 263 52.9
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.8e-66 256.9 276 50.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.7e-66 255.0 177 73.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.5e-62 242.3 255 52.2
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 7.7e-62 241.5 256 53.1
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.5e-60 236.5 266 49.6
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.0e-57 226.9 165 70.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 3.1e-55 219.5 175 62.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.3e-55 218.8 244 49.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 7.7e-54 214.9 163 63.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 7.7e-54 214.9 261 47.1
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.5e-53 211.8 262 46.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.4e-52 210.7 250 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 5.2e-50 202.2 233 47.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 8.2e-48 194.9 161 64.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 3.5e-46 189.5 240 45.0
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.2e-44 182.6 148 62.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.4e-44 181.4 148 62.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-43 179.1 148 62.8
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-41 173.7 148 61.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.7e-41 172.2 134 61.9
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 7.5e-41 171.8 131 61.1
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.6e-38 164.1 120 65.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.3e-32 142.1 125 56.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 7.0e-31 138.7 138 52.2
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.7e-30 136.7 158 52.5
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.6e-29 132.1 233 39.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.6e-29 132.1 122 56.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 6.8e-26 122.1 152 47.4
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.2e-25 121.3 121 52.9
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 5.4e-23 112.5 98 54.1
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.6e-22 110.9 223 35.4
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.9e-21 106.7 89 59.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.2e-15 86.7 90 46.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.5e-14 83.2 59 62.7
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.6e-13 79.0 52 71.2
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.6e-11 74.3 234 29.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 3.1e-10 70.1 60 65.0
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.2e-09 68.2 139 34.5


User provided reference genes

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