Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 3.1e-176 621.7 320 100.0
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 1.8e-94 350.1 326 59.2
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 2.8e-84 316.2 327 54.4
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.7e-84 315.8 331 55.6
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.4e-83 313.2 324 55.6
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 6.9e-83 311.6 343 54.8
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.6e-82 309.7 343 54.5
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 5.9e-82 308.5 323 54.2
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 6.5e-81 305.1 325 54.5
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 2.0e-77 293.5 312 54.5
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 2.0e-74 283.5 322 51.6
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.9e-73 279.6 321 51.4
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 5.2e-70 268.9 325 48.9
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 8.2e-68 261.5 309 49.5
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.0e-66 256.9 326 50.0
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 5.9e-66 255.4 326 48.2
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.3e-65 254.2 368 42.9
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.7e-65 253.8 315 48.9
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 1.9e-64 250.4 327 46.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 1.4e-62 244.2 317 49.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 1.4e-62 244.2 324 46.6
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.4e-62 244.2 325 46.5
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 2.3e-62 243.4 313 47.3
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.3e-62 243.4 317 49.2
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 3.0e-62 243.0 326 47.2
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.2e-61 241.1 317 47.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.2e-61 241.1 324 47.2
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 5.7e-61 238.8 325 45.8
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.7e-60 237.3 318 46.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 2.8e-60 236.5 372 41.7
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.4e-59 232.3 346 39.9
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 9.1e-59 231.5 316 44.9
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 2.0e-58 230.3 361 41.6
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.7e-58 229.9 314 48.7
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.3e-57 226.9 399 39.6
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 9.5e-56 221.5 316 43.7
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 9.5e-56 221.5 333 41.7
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.6e-53 213.4 336 44.3
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 3.4e-53 213.0 356 38.8
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 5.7e-53 212.2 273 48.0
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 5.7e-53 212.2 340 40.6
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 9.8e-53 211.5 340 38.2
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 2.2e-52 210.3 310 44.8
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.2e-52 210.3 314 46.2
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 2.8e-52 209.9 309 44.3
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 8.3e-52 208.4 322 43.5
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.4e-51 207.6 312 42.6
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 9.2e-51 204.9 366 38.0
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.3e-49 200.3 283 43.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.3e-49 200.3 251 47.4
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 2.9e-49 199.9 324 40.4
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.8e-49 199.5 369 38.2
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 6.6e-49 198.7 353 38.0
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 1.6e-47 194.1 312 42.6
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 2.1e-47 193.7 344 39.2
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.8e-46 190.7 319 41.1
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 3.0e-46 189.9 366 38.8
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.2e-45 188.0 364 38.7
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.5e-45 187.6 365 40.0
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.5e-45 187.6 284 42.6
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.0e-45 187.2 329 39.2
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 9.8e-45 184.9 323 38.4
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 1.7e-44 184.1 388 36.6
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 1.7e-44 184.1 314 40.8
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 2.2e-44 183.7 342 39.5
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 2.9e-44 183.3 405 35.1
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 2.9e-44 183.3 317 38.8
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 2.9e-44 183.3 233 48.1
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 3.7e-44 183.0 294 39.8
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 8.3e-44 181.8 409 34.7
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.1e-43 181.4 364 36.0
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.8e-43 180.6 420 33.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 2.4e-43 180.3 307 42.3
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 2.4e-43 180.3 368 36.7
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.2e-42 177.9 364 38.7
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 2.0e-42 177.2 324 36.7
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.3e-41 173.7 368 35.3
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.9e-40 170.6 408 33.6
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.3e-40 169.5 372 36.3
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 7.3e-40 168.7 331 34.1
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.2e-39 167.9 338 37.9
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 4.7e-39 166.0 327 34.6
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 6.2e-39 165.6 325 34.8
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.1e-38 164.9 400 33.0
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.8e-38 164.1 386 33.9
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.8e-38 164.1 333 33.9
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 5.2e-38 162.5 386 35.2
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.0e-37 160.6 362 34.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 2.6e-37 160.2 408 32.8
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.5e-34 149.8 350 33.4
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 1.7e-33 147.5 328 36.6
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 6.6e-33 145.6 329 31.9
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 9.5e-32 141.7 298 37.6
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.6e-31 141.0 375 34.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 2.8e-31 140.2 347 32.0
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.8e-31 140.2 302 38.4
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.4e-30 137.9 331 33.8
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 8.9e-30 135.2 371 30.7
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 1.4e-27 127.9 297 33.7
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.7e-26 123.6 145 47.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.7e-26 123.6 304 32.6
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 7.8e-26 122.1 169 43.2
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.7e-25 120.9 163 44.2
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.2e-23 114.8 148 44.6
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.6e-23 114.4 328 32.0
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 4.0e-22 109.8 328 31.1
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 4.0e-22 109.8 328 31.1
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 8.9e-22 108.6 328 31.1
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 8.4e-20 102.1 322 28.6
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 3.2e-19 100.1 174 37.4
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.2e-19 100.1 324 30.9
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 9.2e-19 98.6 330 27.9
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 2.3e-17 94.0 196 34.2
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 6.9e-14 82.4 265 27.2
Rhsim03G0191000 Rhododendron simsii HOM05D006489 ORTHO05D007556 9.6e-08 62.0 206 30.1


User provided reference genes

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