Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.0e-102 376.7 187 100.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 5.3e-99 364.4 187 93.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.3e-99 364.4 187 93.6
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 5.3e-99 364.4 187 93.6
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.2e-98 363.2 187 93.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.2e-98 363.2 186 93.5
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 92.5
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 93.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 95.2
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 93.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.0e-98 362.5 187 94.7
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 2.0e-98 362.5 187 93.6
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 93.0
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 93.6
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 92.5
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 94.1
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 92.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 93.6
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 93.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.1
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.0
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.7
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 93.6
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 92.5
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 93.0
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 93.0
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 93.6
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.3e-97 359.8 187 92.0
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 91.4
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 92.5
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 92.0
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 93.6
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 92.5
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 93.0
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 92.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 91.4
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 92.0
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 92.5
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.6
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 92.5
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.0
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 90.4
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.5
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.2e-96 355.1 200 87.5
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 90.9
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.4
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.5
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 9.3e-96 353.6 182 93.4
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 89.8
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 91.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 90.4
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.1e-95 352.4 184 91.8
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 89.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.4
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.4
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.4
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 91.4
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 3.5e-95 351.7 186 90.3
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 4.6e-95 351.3 196 87.8
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.8
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 89.3
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 1.3e-94 349.7 201 87.1
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.8
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 89.8
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 89.8
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 88.8
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 88.8
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.1e-94 347.8 185 90.8
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 90.4
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 90.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.2
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.2
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.2
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.2
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.8
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.5e-93 346.3 186 90.9
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 87.7
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 2.5e-93 345.5 206 84.0
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.2
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.2
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 87.7
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.3
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 87.7
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 88.2
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.7
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-91 340.1 193 86.0
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.7
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.4e-91 339.0 185 87.0
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 3.1e-91 338.6 185 86.5
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.1e-91 338.2 181 87.8
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 203 81.8
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 2.0e-90 335.9 206 80.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.6e-90 335.5 188 85.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.6e-90 335.5 188 85.6
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.4e-90 335.1 208 79.8
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 86.1
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.9e-88 329.3 183 86.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 7.1e-88 327.4 186 83.3
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 2.7e-87 325.5 241 70.5
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.3e-86 323.2 173 89.6
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.1e-85 320.1 211 77.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.9e-85 319.3 173 90.2
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.8e-84 315.5 169 89.3
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.4e-83 312.4 185 80.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.0e-81 304.7 187 78.1
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.0e-81 304.7 187 78.1
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 8.5e-81 303.9 187 83.4
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 3.2e-80 302.0 187 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.4e-80 300.4 187 77.0
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.2e-79 300.1 187 80.2
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.0e-78 295.4 187 79.7
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.1e-77 293.5 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.5e-77 292.4 172 80.2
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 5.7e-77 291.2 186 79.6
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.7e-76 289.7 154 89.6
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.4e-75 285.8 158 87.3
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 9.1e-75 283.9 149 91.9
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.5e-74 281.6 187 76.5
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 4.5e-74 281.6 172 77.3
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 7.2e-72 274.2 187 75.4
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.0e-70 270.4 148 87.8
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.3e-68 263.5 214 61.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.0e-66 256.1 158 78.5
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 8.5e-65 250.8 187 71.1
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 5.5e-64 248.1 187 68.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.8e-62 243.0 172 66.3
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.3e-59 231.5 124 89.5
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.8e-54 214.5 133 78.2
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 3.4e-53 212.2 103 96.1
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.6e-50 203.4 167 57.5
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.9e-49 199.1 98 91.8
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 5.0e-49 198.4 139 71.2
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 3.2e-48 195.7 106 89.6
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.6e-47 193.4 175 54.9
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.6e-45 186.0 103 82.5
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.3e-44 183.7 181 56.9
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.9e-44 181.8 98 84.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.8e-38 163.3 85 96.5
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.6e-29 132.9 142 54.9
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.7e-20 103.6 68 70.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 7.1e-19 98.2 52 90.4
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.2e-19 97.8 52 94.2
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.9e-16 90.1 49 87.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 2.3e-14 83.2 45 86.7
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 4.0e-14 82.4 41 92.7
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 6.8e-14 81.6 47 85.1
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.3e-12 77.4 68 58.8
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.9e-12 75.5 41 82.9
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 6.4e-12 75.1 74 59.5
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 4.1e-11 72.4 39 79.5


User provided reference genes

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