Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 9.5e-173 610.1 321 100.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.2e-84 316.6 345 59.1
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.6e-82 309.7 348 57.2
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.7e-79 299.7 338 54.7
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.0e-70 271.2 329 52.3
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 2.3e-70 270.0 336 53.6
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.7e-69 265.4 359 50.7
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 8.3e-68 261.5 335 50.1
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.8e-67 260.4 328 49.4
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.9e-64 250.4 341 49.0
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.6e-63 247.3 295 53.2
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 6.1e-63 245.4 335 46.3
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.8e-62 243.8 339 46.9
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 5.2e-62 242.3 334 47.6
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 2.0e-61 240.4 337 46.0
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 9.8e-61 238.0 327 47.4
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.7e-60 237.3 326 48.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 2.2e-60 236.9 335 47.2
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.8e-60 236.5 327 47.1
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.1e-59 234.6 343 45.5
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.0e-57 228.0 330 47.6
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.0e-57 228.0 349 45.6
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.3e-57 227.6 349 45.8
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.3e-57 226.9 328 47.3
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.9e-57 226.5 334 45.5
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 2.9e-57 226.5 338 45.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.9e-57 226.1 326 45.4
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.0e-57 225.7 349 46.1
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.9e-56 223.8 335 46.0
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.5e-56 223.4 314 48.7
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.3e-56 223.0 326 44.8
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.3e-56 223.0 340 45.0
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.6e-55 220.7 324 46.0
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 4.7e-55 219.2 328 45.7
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.0e-54 218.0 338 45.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.0e-54 218.0 364 42.9
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.8e-54 217.2 339 44.2
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.0e-54 216.1 337 46.0
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 5.2e-54 215.7 341 43.4
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.2e-54 215.7 349 42.7
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 3.4e-53 213.0 329 44.1
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 4.4e-53 212.6 336 46.7
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 2.9e-52 209.9 329 43.5
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.9e-52 209.9 334 44.6
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 4.9e-52 209.1 321 41.4
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 4.9e-52 209.1 337 43.9
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 8.3e-52 208.4 294 46.9
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-51 208.0 339 44.8
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.1e-51 208.0 325 45.8
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.4e-51 206.8 473 35.1
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.1e-51 206.1 339 44.5
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 7.0e-51 205.3 334 42.2
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 9.2e-51 204.9 329 43.5
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.6e-50 204.1 324 43.8
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 6.0e-50 202.2 219 54.3
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 7.8e-50 201.8 334 42.8
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.3e-49 200.3 322 44.7
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.0e-49 199.9 338 42.3
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 3.9e-49 199.5 337 43.0
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 5.0e-49 199.1 330 43.0
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 8.6e-49 198.4 359 43.2
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 8.6e-49 198.4 340 41.8
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.3e-48 196.4 328 42.1
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.3e-48 196.4 328 42.1
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 7.3e-48 195.3 332 44.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.2e-47 194.5 329 44.1
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 3.6e-47 193.0 326 43.9
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 8.0e-47 191.8 331 41.4
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.4e-46 191.0 326 43.3
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.4e-46 191.0 338 42.3
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.4e-46 191.0 334 44.6
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.3e-46 190.3 328 39.6
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 3.1e-46 189.9 342 40.6
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 4.0e-46 189.5 327 40.7
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.5e-45 187.6 327 42.5
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 3.4e-45 186.4 335 41.2
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.8e-45 185.7 327 40.7
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.2e-44 183.7 322 40.7
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 6.4e-44 182.2 326 39.0
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 8.3e-44 181.8 335 39.4
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 1.9e-43 180.6 332 41.0
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.4e-43 180.3 351 40.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.4e-43 180.3 342 40.4
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 4.1e-43 179.5 328 38.4
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 5.4e-43 179.1 346 38.7
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.2e-43 178.3 326 39.0
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 2.1e-42 177.2 332 40.4
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.7e-42 176.8 314 41.7
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 3.5e-42 176.4 357 38.9
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 3.5e-42 176.4 328 42.4
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 4.6e-42 176.0 334 40.1
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 5.6e-40 169.1 324 38.9
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 9.5e-40 168.3 327 36.1
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.6e-39 167.5 326 39.0
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 1.6e-39 167.5 335 36.4
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.1e-39 167.2 340 37.9
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.8e-39 166.8 339 40.4
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 3.6e-39 166.4 281 42.3
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 4.7e-39 166.0 330 37.9
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 8.1e-39 165.2 337 38.0
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.4e-38 164.5 321 38.6
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 8.9e-38 161.8 324 40.1
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 4.4e-37 159.5 335 37.9
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 2.9e-36 156.8 345 38.0
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 9.2e-35 151.8 332 38.0
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 2.7e-34 150.2 328 36.9
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.3e-33 147.1 335 37.6
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 6.6e-33 145.6 336 37.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.9e-32 144.1 330 36.1
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.9e-32 144.1 302 38.4
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 3.3e-32 143.3 322 37.0
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 5.6e-32 142.5 230 43.9
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.8e-31 140.2 323 33.7
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 3.6e-31 139.8 326 35.9
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.4e-30 137.9 334 33.5
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 5.2e-30 136.0 332 34.9
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 6.8e-30 135.6 330 35.2
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 4.4e-29 132.9 279 36.9
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 9.9e-29 131.7 329 33.7
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.3e-28 131.3 286 38.5
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 2.2e-28 130.6 326 33.4
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 2.9e-28 130.2 338 32.2
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 3.8e-28 129.8 329 33.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 8.4e-28 128.6 233 41.2
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.1e-27 128.3 332 35.2
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.1e-27 128.3 344 33.1
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.4e-27 127.9 327 32.7
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 2.4e-27 127.1 329 35.6
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 2.4e-27 127.1 217 38.2
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.2e-27 126.3 385 32.2
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-26 124.4 131 49.6
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.6e-26 124.4 342 33.3
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.7e-26 123.6 386 31.6
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 4.6e-26 122.9 325 32.9
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 8.7e-25 118.6 333 32.7
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.5e-24 117.9 325 32.0
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 3.3e-24 116.7 270 34.4
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 7.3e-24 115.5 329 31.3
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 7.3e-24 115.5 344 32.0
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.3e-23 114.8 165 45.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.8e-23 112.8 274 35.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.4e-22 111.3 186 43.0
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 6.9e-22 109.0 278 32.0
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 9.0e-22 108.6 329 30.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.3e-20 104.8 327 32.1
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 8.4e-20 102.1 181 42.5
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 2.4e-19 100.5 193 35.8
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 3.2e-19 100.1 343 31.8
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.2e-19 99.8 323 29.4
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 7.1e-19 99.0 348 31.6
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-18 98.2 129 45.7
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.6e-18 97.8 121 50.4
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.6e-18 97.8 277 30.3
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 7.8e-18 95.5 213 35.7
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.7e-17 94.4 119 45.4
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 5.6e-16 89.4 317 29.3
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-15 88.2 242 31.0
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 4.8e-15 86.3 203 34.0
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 6.2e-15 85.9 205 36.6
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 8.1e-15 85.5 350 25.7
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.4e-14 84.0 352 25.6
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 2.0e-13 80.9 154 39.0
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.3e-12 78.2 122 44.3
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.9e-11 74.3 172 33.7
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 5.4e-11 72.8 376 24.5
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 2.5e-08 63.9 276 28.3
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 4.3e-08 63.2 203 28.6
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 4.3e-08 63.2 99 37.4
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 9.6e-08 62.0 348 26.7
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.6e-07 61.2 323 28.5
Pp3c15_19720 Physcomitrium patens HOM05D002766 ORTHO05D002809 3.7e-07 60.1 354 23.2
Pp3c9_19620 Physcomitrium patens HOM05D002766 ORTHO05D002809 3.7e-07 60.1 352 24.7
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 4.8e-07 59.7 64 54.7
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 4.8e-07 59.7 139 35.3
Pp3c2_1090 Physcomitrium patens HOM05D002766 ORTHO05D002809 6.2e-07 59.3 398 24.9
Nn1g00944 Nelumbo nucifera HOM05D002766 ORTHO05D002809 1.1e-06 58.5 248 27.8
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 2.4e-06 57.4 109 36.7
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 2.4e-06 57.4 351 23.9
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 3.1e-06 57.0 49 51.0
Zm00001eb249490 Zea mays HOM05D002766 ORTHO05D002809 4.0e-06 56.6 207 27.5
Zm00001eb186540 Zea mays HOM05D002766 ORTHO05D002809 5.3e-06 56.2 140 30.0
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 6.9e-06 55.8 350 26.6


User provided reference genes

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