Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 6.1e-149 530.8 267 100.0
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.5e-107 393.3 270 73.3
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.1e-105 387.1 240 78.8
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 4.1e-105 385.2 270 72.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.2e-104 383.6 272 70.2
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.6e-104 383.3 269 69.9
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.3e-103 379.4 272 68.4
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.0e-103 379.0 269 70.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 6.6e-103 377.9 269 68.0
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.9e-102 376.3 272 68.4
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 2.5e-102 375.9 277 69.3
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.5e-102 375.9 270 69.6
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 4.3e-102 375.2 275 68.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 9.5e-102 374.0 275 67.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 1.2e-101 373.6 269 66.9
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.1e-101 372.9 274 67.5
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.1e-101 372.9 274 67.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 2.1e-101 372.9 271 67.5
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 2.8e-101 372.5 280 67.9
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.8e-101 372.5 272 68.0
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 3.6e-101 372.1 269 68.8
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 8.1e-101 370.9 278 66.5
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.3e-100 369.4 266 69.5
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 6.8e-100 367.9 264 69.7
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 6.8e-100 367.9 276 67.4
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 8.9e-100 367.5 276 67.4
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 8.9e-100 367.5 276 67.0
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.2e-99 367.1 270 66.7
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.2e-99 367.1 272 66.5
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.5e-99 366.7 269 68.8
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.6e-99 365.9 274 66.8
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.4e-99 365.2 277 65.3
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 7.5e-99 364.4 267 68.5
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 9.8e-99 364.0 274 66.1
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.3e-98 363.6 272 66.9
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.3e-98 363.6 273 67.4
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-98 363.6 274 66.4
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.7e-98 363.2 278 65.1
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 4.9e-98 361.7 270 68.1
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 6.4e-98 361.3 276 65.2
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.1e-97 360.5 275 66.5
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.4e-97 360.1 274 65.3
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.4e-97 360.1 282 65.6
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.9e-97 359.8 270 67.4
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.9e-97 359.8 271 65.7
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.9e-97 359.8 271 65.7
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.4e-97 359.4 271 66.1
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 3.2e-97 359.0 272 66.9
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 7.1e-97 357.8 271 65.7
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 7.1e-97 357.8 275 65.8
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 9.2e-97 357.5 267 67.8
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.2e-97 357.5 271 66.4
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.2e-96 357.1 271 66.4
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.2e-96 357.1 266 66.5
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-96 356.7 271 66.4
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 3.5e-96 355.5 272 65.4
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 3.5e-96 355.5 277 63.9
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 4.6e-96 355.1 277 65.0
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 4.6e-96 355.1 273 65.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 4.6e-96 355.1 271 65.3
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 7.8e-96 354.4 276 65.6
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 7.8e-96 354.4 275 65.1
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 7.8e-96 354.4 269 65.4
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.3e-95 353.6 279 64.2
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.3e-95 352.8 269 66.2
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.9e-95 352.1 270 64.8
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 5.1e-95 351.7 271 64.6
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 8.6e-95 350.9 281 61.9
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.9e-94 349.7 275 64.4
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.5e-94 349.4 234 72.6
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 3.3e-94 349.0 270 63.7
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 5.6e-94 348.2 272 65.8
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 5.6e-94 348.2 272 64.0
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 5.6e-94 348.2 277 65.7
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 9.5e-94 347.4 259 66.4
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.8e-93 345.9 272 65.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.8e-93 345.9 276 63.4
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.8e-93 345.9 234 69.2
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.6e-93 345.5 278 63.7
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 3.6e-93 345.5 269 66.2
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 4.7e-93 345.1 281 61.6
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.2e-93 344.7 274 63.5
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.2e-93 344.7 276 63.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 8.1e-93 344.4 281 61.2
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 8.1e-93 344.4 274 63.5
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 8.1e-93 344.4 276 63.4
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 8.1e-93 344.4 276 63.8
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.1e-92 344.0 281 61.2
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.1e-92 344.0 288 60.8
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-92 343.2 281 60.9
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.8e-92 343.2 281 60.9
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 3.1e-92 342.4 271 63.5
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 4.0e-92 342.0 234 70.5
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 8.9e-92 340.9 281 60.9
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.2e-91 340.5 269 63.6
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.0e-91 339.7 281 60.5
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.6e-91 339.3 234 69.2
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.4e-91 339.0 283 59.7
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.9e-91 337.4 283 59.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.9e-91 337.4 273 60.8
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 9.9e-91 337.4 273 60.8
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.2e-90 336.3 281 60.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 2.9e-90 335.9 281 59.8
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.9e-90 335.9 281 59.8
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 4.9e-90 335.1 280 58.9
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.9e-90 335.1 274 60.2
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.1e-89 334.0 279 59.1
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.1e-89 334.0 284 60.2
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.4e-89 333.6 279 59.5
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-89 333.6 264 62.9
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.4e-89 333.6 264 62.9
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 2.4e-89 332.8 281 59.1
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.2e-89 332.4 281 58.4
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 4.1e-89 332.0 284 57.7
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 4.1e-89 332.0 284 57.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 4.1e-89 332.0 265 61.5
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 5.4e-89 331.6 281 59.1
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 5.4e-89 331.6 278 58.6
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-88 330.5 282 59.2
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-88 330.5 282 59.2
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.2e-88 330.5 279 58.8
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.7e-88 329.3 269 60.6
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 3.5e-88 328.9 303 56.8
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 6.0e-88 328.2 283 58.0
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 7.8e-88 327.8 282 58.5
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.3e-87 327.0 271 61.3
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.7e-87 326.6 283 58.3
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.7e-87 326.6 283 58.3
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.3e-87 326.2 288 58.7
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.6e-87 324.7 272 59.9
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.1e-86 323.9 269 60.6
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.9e-86 323.2 275 61.5
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 9.6e-86 320.9 270 60.4
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.2e-85 320.5 269 61.0
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 4.7e-85 318.5 278 56.8
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.4e-84 317.0 275 58.2
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 5.8e-83 311.6 269 59.1
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.3e-82 310.5 276 58.0
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.0e-79 300.8 262 57.6
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.9e-78 296.6 245 61.6
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.5e-78 296.2 273 55.7
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.1e-77 291.2 271 56.5
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.1e-76 289.3 271 56.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 2.4e-73 279.6 278 50.7
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.6e-72 276.9 272 51.8
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.3e-71 273.9 240 57.5
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.3e-70 268.9 262 50.8
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.8e-69 266.2 198 66.2
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.2e-69 265.0 180 68.3
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.2e-65 252.3 257 47.9
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.4e-60 237.3 242 50.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 5.8e-59 231.9 185 61.6
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 2.2e-58 229.9 235 47.7
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.3e-55 220.7 178 65.2
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.3e-55 219.9 280 40.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 8.7e-55 218.0 153 70.6
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.3e-53 214.2 158 69.6
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 6.5e-50 201.8 152 63.2
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.3e-46 189.1 239 44.8
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 4.8e-45 185.7 205 47.3
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 6.5e-42 175.3 237 38.4
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.9e-40 168.3 172 54.1
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-35 154.5 136 59.6
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.5e-35 154.1 136 59.6
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.5e-35 154.1 136 59.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-22 110.9 113 52.2
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-20 102.8 116 42.2
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.7e-16 90.1 180 33.9
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.2e-13 80.5 74 55.4


User provided reference genes

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