Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A840T53 Lonicera japonica HOM05D000458 ORTHO05D044799 3.3e-23 110.9 58 100.0
Lj8C154G21 Lonicera japonica HOM05D000458 ORTHO05D004796 7.0e-18 93.2 51 90.2
CAN.G162.39 Capsicum annuum HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Nitab4.5_0002330g0040 Nicotiana tabacum HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Nitab4.5_0005017g0020 Nicotiana tabacum HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Oeu051082.2 Olea europaea HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Peaxi162Scf00069g01722 Petunia axillaris HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Solyc07g062940.4 Solanum lycopersicum HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
Sopen07g031130 Solanum pennellii HOM05D000458 ORTHO05D004796 2.0e-17 91.7 51 88.2
CSS0014493 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 2.7e-17 91.3 51 90.2
CSS0025002 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 2.7e-17 91.3 51 90.2
Cc05_g11810 Coffea canephora HOM05D000458 ORTHO05D004796 4.6e-17 90.5 51 86.3
Dinv14934 Davidia involucrata HOM05D000458 ORTHO05D004796 4.6e-17 90.5 51 88.2
HanXRQChr10g0302641 Helianthus annuus HOM05D000458 ORTHO05D004796 7.8e-17 89.7 51 86.3
Oeu037369.1 Olea europaea HOM05D000458 ORTHO05D004796 1.3e-16 89.0 51 86.3
DCAR_020994 Daucus carota HOM05D000458 ORTHO05D004796 1.7e-16 88.6 50 90.0
HanXRQChr15g0495451 Helianthus annuus HOM05D000458 ORTHO05D004796 2.3e-16 88.2 51 84.3
Manes.03G106600 Manihot esculenta HOM05D000458 ORTHO05D004796 2.3e-16 88.2 51 86.3
Manes.15G089100 Manihot esculenta HOM05D000458 ORTHO05D004796 2.3e-16 88.2 51 86.3
Potri.011G116300 Populus trichocarpa HOM05D000458 ORTHO05D004796 2.3e-16 88.2 51 86.3
Sabra16G0260600 Salix brachista HOM05D000458 ORTHO05D004796 2.3e-16 88.2 51 86.3
ECA234G3073 Erigeron canadensis HOM05D000458 ORTHO05D004796 3.0e-16 87.8 51 82.4
SGA_v2.0_scaffold34G13801 Striga asiatica HOM05D000458 ORTHO05D004796 3.0e-16 87.8 51 84.3
Eucgr.F01158 Eucalyptus grandis HOM05D000458 ORTHO05D004796 3.9e-16 87.4 51 86.3
Migut.H01953 Erythranthe guttata HOM05D000458 ORTHO05D004796 6.6e-16 86.7 51 82.4
Rhsim06G0201500 Rhododendron simsii HOM05D000458 ORTHO05D004796 6.6e-16 86.7 51 86.3
Sabra11G0101900 Salix brachista HOM05D000458 ORTHO05D004796 6.6e-16 86.7 51 84.3
vmacro11884 Vaccinium macrocarpon HOM05D000458 ORTHO05D004796 6.6e-16 86.7 51 86.3
CiPaw.11G171700 Carya illinoinensis HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 84.3
Duzib170G0212 Durio zibethinus HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 86.3
Duzib268G0440 Durio zibethinus HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 86.3
Potri.001G397600 Populus trichocarpa HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 84.3
QL08p022680 Quercus lobata HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 82.4
Thecc.07G095400 Theobroma cacao HOM05D000458 ORTHO05D004796 8.6e-16 86.3 51 86.3
MD11G1252300 Malus domestica HOM05D000458 ORTHO05D004796 1.1e-15 85.9 49 87.8
Prupe.4G176700 Prunus persica HOM05D000458 ORTHO05D004796 1.1e-15 85.9 51 84.3
TPR.G7967 Trifolium pratense HOM05D000458 ORTHO05D004796 1.1e-15 85.9 51 84.3
Ah.06g184510 Amaranthus hybridus HOM05D000458 ORTHO05D004796 1.5e-15 85.5 51 82.4
Lsat_1_v5_gn_5_128461 Lactuca sativa HOM05D000458 ORTHO05D004796 1.5e-15 85.5 51 82.4
Phvul.005G074300 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 1.5e-15 85.5 51 82.4
TWI38G0342 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 1.5e-15 85.5 51 84.3
Ciclev10007625m.g Citrus clementina HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
COL.COLO4_36710 Corchorus olitorius HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
ECA236G3680 Erigeron canadensis HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 82.4
FvH4_3g19600 Fragaria vesca HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
FAN11G2605 Fragaria x ananassa HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
FAN16G2185 Fragaria x ananassa HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
FAN25G3598 Fragaria x ananassa HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 84.3
Lj3g0007512 Lotus japonicus HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 82.4
PGR083G0851 Punica granatum HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 82.4
SGA_v2.0_scaffold73G24238 Striga asiatica HOM05D000458 ORTHO05D004796 1.9e-15 85.1 51 82.4
Duzib213G0712 Durio zibethinus HOM05D000458 ORTHO05D004796 2.5e-15 84.7 51 82.4
Duzib244G0005 Durio zibethinus HOM05D000458 ORTHO05D004796 2.5e-15 84.7 51 84.3
RcHm_v2.0_Chr5g0032781 Rosa chinensis HOM05D000458 ORTHO05D004796 2.5e-15 84.7 51 82.4
CANSAT56G2918 Cannabis sativa HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 82.4
Glyma.12G226300 Glycine max HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 84.3
Glyma.13G274500 Glycine max HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 84.3
Phvul.011G164700 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 82.4
SalBow7G2789 Salvia bowleyana HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 80.4
Sc03g0010150 Simmondsia chinensis HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 82.4
GSVIVG01014297001 Vitis vinifera HOM05D000458 ORTHO05D004796 3.3e-15 84.3 51 78.4
EL10Ac4g08224 Beta vulgaris HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
CiPaw.12G120000 Carya illinoinensis HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
AUR62019457 Chenopodium quinoa HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 80.4
Gohir.A01G061500 Gossypium hirsutum HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 84.3
Gohir.D01G048100 Gossypium hirsutum HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 84.3
Gorai.002G067900 Gossypium raimondii HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 84.3
Lalb_Chr01g0016761 Lupinus albus HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
MD03G1231300 Malus domestica HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
Psat5g241840 Pisum sativum HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
TWI39G1101 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 82.4
TAR629G0109 Trochodendron aralioides HOM05D000458 ORTHO05D004796 4.3e-15 84.0 51 78.4
Atru.chr2.2425 Acer truncatum HOM05D000458 ORTHO05D004796 5.6e-15 83.6 51 84.3
Gohir.A04G035100 Gossypium hirsutum HOM05D000458 ORTHO05D004796 5.6e-15 83.6 51 82.4
Gohir.D05G348300 Gossypium hirsutum HOM05D000458 ORTHO05D004796 5.6e-15 83.6 51 82.4
Gorai.009G376100 Gossypium raimondii HOM05D000458 ORTHO05D004796 5.6e-15 83.6 51 82.4
arahy.Tifrunner.gnm1.ann1.IF9FMX Arachis hypogaea HOM05D000458 ORTHO05D004796 7.3e-15 83.2 51 82.4
arahy.Tifrunner.gnm1.ann1.Q9DAYR Arachis hypogaea HOM05D000458 ORTHO05D004796 7.3e-15 83.2 51 82.4
CSS0021889 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 7.3e-15 83.2 51 82.4
Medtr2g078740 Medicago truncatula HOM05D000458 ORTHO05D004796 7.3e-15 83.2 51 80.4
Nn1g04174 Nelumbo nucifera HOM05D000458 ORTHO05D004796 7.3e-15 83.2 51 76.5
Ca_03525_v3 Cicer arietinum L. HOM05D000458 ORTHO05D004796 9.5e-15 82.8 51 80.4
Glyma.12G162963 Glycine max HOM05D000458 ORTHO05D004796 9.5e-15 82.8 51 80.4
Glyma.06G238000 Glycine max HOM05D000458 ORTHO05D004796 1.2e-14 82.4 51 80.4
Lalb_Chr25g0286251 Lupinus albus HOM05D000458 ORTHO05D004796 1.2e-14 82.4 51 80.4
TAR627G0899 Trochodendron aralioides HOM05D000458 ORTHO05D004796 1.2e-14 82.4 51 76.5
Actinidia09698 Actinidia chinensis HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
Aa31LG8G2420 Aethionema arabicum HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
A05p34250 Brassica napus HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
C05p52010 Brassica napus HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
BolC5t33886H Brassica oleracea HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
BraA05t22245Z Brassica rapa HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 80.4
ClCG11G017900 Citrullus lanatus HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 78.4
MELO3C025602.2 Cucumis melo HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 78.4
CsaV3_4G033530 Cucumis sativus L. HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 78.4
Sed0018585 Sechium edule HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 78.4
Hund22872 Selenicereus undatus HOM05D000458 ORTHO05D004796 1.6e-14 82.0 51 78.4
Aa31LG10G1970 Aethionema arabicum HOM05D000458 ORTHO05D004796 2.1e-14 81.6 51 80.4
Carub.0003s1488 Capsella rubella HOM05D000458 ORTHO05D004796 2.1e-14 81.6 51 78.4
AT3G15220 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 2.8e-14 81.3 51 78.4
Lalb_Chr20g0109541 Lupinus albus HOM05D000458 ORTHO05D004796 2.8e-14 81.3 51 78.4
AT1G53165 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
BcaC08g44049 Brassica carinata HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 80.4
C06p14490 Brassica napus HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 80.4
BolC6t36630H Brassica oleracea HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 80.4
Carub.0001s4233 Capsella rubella HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
CARHR043390 Cardamine hirsuta HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
Thhalv10011332m.g Eutrema salsugineum HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
Sp1g39720 Schrenkiella parvula HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
Sed0017869 Sechium edule HOM05D000458 ORTHO05D004796 3.6e-14 80.9 51 78.4
Aqoxy1G02338 Aquilegia oxysepala HOM05D000458 ORTHO05D004796 4.7e-14 80.5 51 74.5
AL3G27620 Arabidopsis lyrata HOM05D000458 ORTHO05D004796 4.7e-14 80.5 51 78.4
A05p18560 Brassica napus HOM05D000458 ORTHO05D004796 4.7e-14 80.5 51 80.4
BraA05t20749Z Brassica rapa HOM05D000458 ORTHO05D004796 4.7e-14 80.5 51 80.4
THA.LOC104818087 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 6.2e-14 80.1 51 78.4
BcaB02g10934 Brassica carinata HOM05D000458 ORTHO05D004796 8.1e-14 79.7 51 78.4
CARHR090210 Cardamine hirsuta HOM05D000458 ORTHO05D004796 8.1e-14 79.7 51 76.5
unitig_46.g18322 Utricularia gibba HOM05D000458 ORTHO05D004796 8.1e-14 79.7 51 72.5
BcaB06g29546 Brassica carinata HOM05D000458 ORTHO05D004796 1.1e-13 79.3 51 76.5
Thhalv10022019m.g Eutrema salsugineum HOM05D000458 ORTHO05D004796 1.8e-13 78.6 51 76.5
Sp3g13430 Schrenkiella parvula HOM05D000458 ORTHO05D004796 2.3e-13 78.2 51 76.5
Lj3g0001084 Lotus japonicus HOM05D000458 ORTHO05D004796 3.1e-13 77.8 51 76.5
PSO541G3462 Papaver somniferum HOM05D000458 ORTHO05D004796 5.2e-13 77.0 51 68.6
PSO675G8241 Papaver somniferum HOM05D000458 ORTHO05D004796 5.2e-13 77.0 51 68.6
HPP92_010204 Vanilla planifolia HOM05D000458 ORTHO05D004796 8.9e-13 76.3 51 72.5
Nn1g06451 Nelumbo nucifera HOM05D000458 ORTHO05D004796 1.2e-12 75.9 51 70.6
Gohir.A13G146700 Gossypium hirsutum HOM05D000458 ORTHO05D004796 5.8e-12 73.6 51 72.5
MBI02_g22346_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D004796 7.5e-12 73.2 51 66.7
Haze_09450 Corylus avellana HOM05D000458 ORTHO05D044799 1.3e-11 72.4 44 77.3
Os07g0507300 Oryza sativa ssp. japonica HOM05D000458 ORTHO05D004796 1.7e-11 72.0 51 68.6
Zm00001eb322360 Zea mays HOM05D000458 ORTHO05D004796 2.9e-11 71.2 51 68.6
Mapoly0133s0001 Marchantia polymorpha HOM05D000458 ORTHO05D004796 3.2e-10 67.8 54 64.8
SMO351G0517 Selaginella moellendorffii HOM05D000458 ORTHO05D004796 7.1e-10 66.6 39 79.5
Pp3c1_23810 Physcomitrium patens HOM05D000458 ORTHO05D004796 1.6e-09 65.5 39 76.9
THA.LOC104810460 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 2.1e-09 65.1 76 52.6
ATR0150G013 Amborella trichopoda HOM05D000458 ORTHO05D004796 4.6e-09 63.9 38 81.6
CDE02G0939 Ceratophyllum demersum HOM05D000458 ORTHO05D004796 7.8e-09 63.2 39 76.9
Pp3c17_14200 Physcomitrium patens HOM05D000458 ORTHO05D004796 1.0e-08 62.8 39 74.4
AagrBONN_evm.TU.Sc2ySwM_344.4386 Anthoceros agrestis HOM05D000458 ORTHO05D004796 2.3e-08 61.6 39 71.8
CDE05G2963 Ceratophyllum demersum HOM05D000458 ORTHO05D004796 6.6e-08 60.1 39 74.4
AUR62036173 Chenopodium quinoa HOM05D000458 ORTHO05D004796 3.3e-07 57.8 45 60.0


User provided reference genes

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