Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.2e-285 985.7 477 100.0
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.8e-221 771.2 483 78.1
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.1e-215 751.1 483 75.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.3e-213 744.2 485 76.1
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.8e-212 742.7 483 74.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.0e-211 739.2 483 75.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.3e-207 725.7 483 72.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 8.7e-207 723.8 485 74.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 6.3e-205 717.6 483 71.4
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.4e-204 715.7 508 69.7
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.5e-203 713.0 491 71.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 4.2e-201 704.9 483 70.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 5.5e-201 704.5 485 70.7
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.6e-200 703.0 485 70.1
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 7.9e-200 700.7 494 69.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 7.9e-200 700.7 485 69.7
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.8e-199 699.5 486 69.3
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.1e-199 698.0 483 69.6
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 8.8e-199 697.2 483 69.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.0e-198 696.0 493 70.0
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.5e-198 695.7 487 69.8
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.3e-198 695.3 486 69.5
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.7e-198 694.5 489 68.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 9.7e-198 693.7 487 69.8
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.3e-197 693.3 486 68.7
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-197 692.6 490 69.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.2e-197 692.6 521 66.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.8e-197 692.2 484 69.6
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.7e-197 691.8 487 70.0
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 8.2e-197 690.6 491 69.2
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.8e-196 689.5 484 70.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 3.1e-196 688.7 485 69.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 4.1e-196 688.3 486 67.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 5.3e-196 688.0 485 69.5
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.1e-196 687.2 491 69.0
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 2.6e-195 685.6 487 68.6
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.8e-194 681.8 489 68.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 8.5e-194 680.6 485 68.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 8.5e-194 680.6 526 65.6
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.5e-193 679.1 488 69.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.2e-193 678.7 486 67.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 9.4e-193 677.2 486 69.1
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.2e-192 676.8 488 70.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.2e-192 676.8 493 68.8
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-192 676.0 483 68.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 3.6e-192 675.2 484 70.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 4.7e-192 674.9 526 64.3
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.0e-191 673.7 488 70.1
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.4e-191 673.3 482 67.0
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.4e-191 673.3 526 64.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.8e-191 672.9 528 63.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.3e-191 672.5 526 63.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.7e-191 671.0 485 69.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 6.7e-191 671.0 492 67.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 8.8e-191 670.6 488 67.8
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.5e-190 669.8 485 68.7
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.6e-190 669.1 509 66.8
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 9.7e-190 667.2 552 61.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.3e-189 666.8 486 68.5
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 8.2e-189 664.1 489 68.9
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-188 663.7 497 66.4
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.1e-188 661.8 499 66.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.1e-188 660.6 442 71.5
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.0e-187 659.4 492 67.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.9e-187 657.9 489 68.1
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.9e-186 655.6 491 68.2
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 6.5e-186 654.4 483 68.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.9e-185 652.9 489 67.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 4.2e-185 651.7 483 65.2
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.2e-185 651.7 487 66.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 9.4e-185 650.6 536 61.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.7e-184 649.0 524 63.2
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 3.6e-184 648.7 485 66.8
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.6e-184 648.7 485 66.2
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.1e-184 647.9 485 66.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 8.0e-184 647.5 478 68.0
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.0e-183 647.1 543 61.1
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-182 643.7 522 63.2
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 9.1e-180 634.0 479 66.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.7e-179 630.9 493 64.5
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.3e-178 630.2 397 76.8
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.3e-178 630.2 445 70.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.7e-178 629.8 479 66.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.2e-178 629.4 479 66.2
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.0e-175 619.0 442 68.1
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 4.0e-175 618.6 486 63.2
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 7.0e-172 607.8 485 61.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.1e-172 607.4 485 62.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 5.9e-171 604.7 446 66.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.0e-170 604.0 485 62.5
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.2e-170 602.8 489 62.0
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.9e-169 599.7 492 62.2
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.1e-168 596.3 397 74.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-167 593.2 494 60.9
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-166 589.7 396 72.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 9.8e-166 587.4 483 60.7
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 8.3e-165 584.3 484 61.0
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.8e-164 583.2 489 61.3
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 3.8e-162 575.5 422 68.2
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.5e-161 572.8 484 60.1
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-160 570.5 484 59.7
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-160 570.5 487 59.3
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-160 570.1 487 59.3
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.6e-160 570.1 487 59.3
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.6e-160 568.9 487 59.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.7e-160 568.5 483 59.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 6.1e-160 568.2 487 59.1
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.4e-159 567.0 488 58.6
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.4e-159 567.0 488 58.6
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.0e-159 565.5 484 58.1
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.8e-159 564.7 485 60.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-158 563.9 489 59.5
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-158 563.5 487 58.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-157 558.9 488 59.6
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.8e-156 556.6 437 65.0
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.0e-156 554.7 402 69.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.6e-155 552.0 396 71.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 7.8e-155 551.2 438 63.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.9e-154 548.9 498 55.6
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.3e-149 533.9 505 55.4
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.4e-148 528.5 409 65.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.0e-146 521.9 514 52.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.5e-145 517.7 474 56.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.3e-143 513.1 446 60.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.1e-143 512.7 290 82.1
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.1e-140 504.2 486 54.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.4e-140 501.9 355 70.1
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.5e-137 493.0 466 55.4
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.6e-136 490.3 282 80.5
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.6e-136 490.3 450 56.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.4e-133 478.4 287 78.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.6e-123 445.7 308 65.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.8e-120 436.4 302 68.9
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.3e-111 405.6 287 66.9
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.9e-109 399.8 381 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.1e-107 393.7 528 42.6
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.0e-107 392.1 574 40.8
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.3e-106 390.2 305 63.6
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.1e-100 371.3 304 58.6
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.9e-100 370.5 389 49.6
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.1e-99 367.1 306 64.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.3e-97 359.8 546 40.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 6.5e-85 318.9 382 48.4
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.8e-66 257.7 199 62.3
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.7e-65 252.7 440 37.7
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.8e-55 221.1 196 58.2
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-49 201.1 171 59.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.1e-44 185.3 197 53.3
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.9e-42 175.6 149 61.1
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-39 168.3 138 58.0
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-39 168.3 138 58.0
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.2e-38 165.2 249 42.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-37 161.8 87 80.5
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.0e-37 159.8 85 81.2
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.3e-36 156.8 176 48.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 7.3e-36 156.0 127 51.2
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-35 155.2 85 78.8
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.5e-33 148.3 134 59.7
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 7.5e-33 146.0 86 74.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 7.5e-33 146.0 86 74.4
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.7e-32 143.7 117 60.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.2e-27 128.6 143 48.3
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 7.5e-25 119.4 158 42.4
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 4.6e-22 110.2 161 40.4
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.9e-13 80.5 43 83.7
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.9e-12 78.2 75 54.7
Glyma.11G158000 Glycine max HOM05D001519 ORTHO05D001403 6.0e-06 56.6 31 80.6


User provided reference genes

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