Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 0.0e+00 1254.6 624 100.0
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 7.2e-193 677.9 651 56.7
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 3.7e-181 639.0 661 52.6
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.3e-165 587.4 659 50.7
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 8.3e-165 584.7 627 50.1
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-164 584.3 660 48.5
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 5.4e-164 582.0 657 49.0
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 7.0e-164 581.6 635 50.1
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 7.3e-161 571.6 724 46.7
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 1.2e-160 570.9 631 49.4
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 2.1e-160 570.1 667 48.1
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.8e-160 569.7 660 49.2
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 2.8e-160 569.7 609 52.5
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.6e-160 569.3 633 50.1
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-158 563.9 640 49.7
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 9.8e-158 561.2 631 48.8
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.7e-157 560.5 635 49.8
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.7e-157 560.5 647 49.8
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.3e-157 558.1 636 49.7
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 5.4e-156 555.4 647 49.5
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 9.2e-156 554.7 634 49.2
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 9.2e-156 554.7 633 49.6
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 1.2e-155 554.3 642 49.8
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.6e-155 553.9 645 48.4
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.3e-154 550.8 635 49.0
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 8.6e-154 548.1 640 49.1
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.1e-151 541.2 629 48.3
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 2.0e-150 537.0 659 46.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.4e-150 536.2 649 47.9
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.3e-149 534.3 631 47.2
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 2.2e-149 533.5 629 47.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.9e-148 530.4 658 45.6
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 7.1e-148 528.5 629 49.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.3e-146 523.5 642 47.2
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 8.6e-146 521.5 658 46.7
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 2.5e-145 520.0 633 47.2
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 3.3e-145 519.6 641 45.1
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 2.1e-144 516.9 633 45.5
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.6e-142 510.0 630 46.2
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 3.7e-141 506.1 623 47.0
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 8.3e-141 505.0 713 44.6
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 2.4e-140 503.4 629 45.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.6e-139 500.7 395 64.8
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.8e-139 498.4 633 44.9
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 1.0e-138 498.0 632 45.6
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.3e-138 497.7 630 47.0
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 8.6e-138 495.0 641 45.7
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 9.6e-137 491.5 547 51.4
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 1.2e-136 491.1 654 46.2
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.1e-136 490.3 650 44.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 4.0e-135 486.1 648 44.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 8.9e-135 485.0 638 43.7
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 2.6e-134 483.4 656 45.9
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 7.6e-134 481.9 636 45.6
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.3e-133 481.1 663 45.2
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 1.7e-133 480.7 631 43.9
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 8.4e-133 478.4 631 43.7
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 8.4e-133 478.4 631 43.7
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.4e-132 477.6 662 44.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.5e-129 466.8 660 42.0
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 3.3e-129 466.5 627 43.1
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 9.6e-129 464.9 627 42.9
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 9.6e-129 464.9 659 42.9
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.3e-128 464.5 641 45.7
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.1e-127 461.5 658 41.6
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 4.4e-126 456.1 636 43.9
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 4.4e-126 456.1 626 43.1
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 3.8e-125 453.0 654 43.6
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 6.4e-125 452.2 660 42.0
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 2.4e-124 450.3 634 44.5
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 2.4e-124 450.3 634 44.5
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 7.1e-124 448.7 623 42.9
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 4.8e-120 436.0 629 41.0
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 1.8e-119 434.1 667 42.9
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 3.2e-116 423.3 327 64.8
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.6e-115 421.0 497 48.7
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.7e-115 420.2 396 56.6
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 6.7e-114 415.6 666 41.0
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.2e-109 400.6 456 48.5
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.1e-103 381.7 470 48.5
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 3.2e-100 370.2 408 49.5
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.1e-92 345.1 470 45.5
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.5e-86 324.7 317 53.6
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 8.8e-82 308.9 319 53.3
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 3.1e-79 300.4 278 54.3
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-76 292.0 225 65.3
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 6.7e-74 282.7 276 53.3
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.8e-63 248.1 414 39.4
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.1e-60 238.8 379 40.6
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.6e-59 235.0 276 47.8
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 2.3e-58 231.1 322 45.7
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 2.8e-56 224.2 328 39.3
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 5.9e-54 216.5 225 52.0
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 4.9e-48 196.8 365 40.0
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 3.3e-44 184.1 694 26.1
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 6.0e-38 163.3 161 50.3
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 1.5e-36 158.7 634 25.7
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.5e-36 157.9 297 35.0
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.4e-34 152.1 148 55.4
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 7.8e-30 136.3 138 57.2
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 6.2e-27 126.7 257 36.6
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.4e-26 125.6 147 46.3
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 2.3e-26 124.8 428 28.5
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 6.8e-26 123.2 502 27.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.5e-25 122.1 132 44.7
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.0e-25 121.7 135 44.4
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 2.2e-24 118.2 122 50.0
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 4.9e-24 117.1 283 32.9
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 4.9e-24 117.1 171 39.8
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.3e-21 108.2 101 51.5
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 3.0e-21 107.8 354 26.8
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.9e-21 107.5 125 46.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.5e-17 95.5 136 44.1
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 1.1e-15 89.4 147 34.7
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 1.6e-14 85.5 140 34.3
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 6.0e-14 83.6 179 34.1
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 5.1e-13 80.5 111 39.6
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 4.8e-11 73.9 122 32.8
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 2.4e-10 71.6 96 40.6
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 1.4e-07 62.4 75 44.0
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 2.4e-07 61.6 87 47.1


User provided reference genes

Program Settings