Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 9.8e-233 809.7 384 100.0
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.0e-133 480.7 441 57.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 3.7e-131 472.2 463 53.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 4.8e-131 471.9 462 53.5
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 1.1e-130 470.7 463 53.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.4e-130 470.3 456 54.6
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 9.1e-130 467.6 462 53.7
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 9.1e-130 467.6 463 53.8
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.2e-129 467.2 467 53.3
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.6e-129 466.1 467 53.3
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 2.6e-129 466.1 462 53.7
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 3.5e-129 465.7 467 53.3
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.7e-129 464.5 466 52.6
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.0e-128 464.2 466 52.8
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 5.0e-128 461.8 463 53.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.1e-127 460.7 462 53.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 1.5e-127 460.3 462 54.3
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.9e-127 459.9 462 53.5
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 5.5e-127 458.4 462 52.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 5.5e-127 458.4 465 53.1
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 7.2e-127 458.0 464 52.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.2e-126 457.2 464 51.5
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 4.7e-126 455.3 463 52.7
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.0e-125 454.1 462 52.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.4e-125 453.8 460 53.0
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.4e-125 453.8 462 53.0
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.8e-125 453.4 462 52.4
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.8e-125 453.4 463 52.3
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 2.3e-125 453.0 463 52.9
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 5.2e-125 451.8 469 52.0
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-124 450.7 469 51.6
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.1e-124 450.7 463 52.7
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.5e-124 450.3 462 52.2
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.0e-124 449.9 483 51.6
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 3.3e-124 449.1 463 52.5
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 3.3e-124 449.1 466 52.4
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 4.4e-124 448.7 450 53.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 4.4e-124 448.7 462 52.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 5.7e-124 448.4 462 52.6
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 5.7e-124 448.4 463 51.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 7.5e-124 448.0 463 52.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.7e-123 446.8 462 51.5
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.2e-123 446.4 472 51.7
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 2.2e-123 446.4 435 57.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 2.8e-123 446.0 464 52.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.7e-123 445.7 463 52.9
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 6.3e-123 444.9 462 51.9
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.8e-122 443.4 462 51.1
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.4e-122 443.0 460 51.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 2.4e-122 443.0 469 51.0
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.1e-122 442.6 367 60.2
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 5.3e-122 441.8 463 51.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.2e-121 440.7 461 51.0
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.0e-121 439.9 463 51.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.7e-121 439.5 456 51.3
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.7e-121 439.5 473 50.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 3.5e-121 439.1 463 51.0
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 3.5e-121 439.1 463 52.1
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 5.9e-121 438.3 463 51.6
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.0e-120 437.6 460 50.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.3e-120 437.2 460 50.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.3e-120 437.2 463 49.5
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.7e-120 436.8 463 50.1
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.7e-120 436.8 463 49.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 1.7e-120 436.8 478 50.8
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.7e-120 436.8 458 50.7
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.8e-120 435.6 456 50.2
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 3.8e-120 435.6 467 49.5
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 5.0e-120 435.3 467 49.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 5.0e-120 435.3 467 49.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 8.5e-120 434.5 463 51.0
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.9e-119 433.3 463 49.7
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 5.5e-119 431.8 519 47.8
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 7.2e-119 431.4 460 49.1
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.2e-118 430.6 467 49.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.2e-118 430.6 467 49.0
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.2e-118 430.6 467 49.0
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 1.2e-118 430.6 467 49.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.2e-118 430.6 377 58.4
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.6e-118 430.3 485 48.5
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 4.7e-118 428.7 467 48.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 4.0e-117 425.6 466 50.0
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 5.2e-117 425.2 453 49.9
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 4.1e-114 415.6 464 48.3
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.5e-112 408.3 575 42.6
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.0e-109 399.4 427 52.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 6.8e-109 398.3 409 52.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.6e-108 396.4 463 47.7
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.6e-108 396.4 409 52.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.7e-107 393.7 430 50.0
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 7.0e-106 388.3 606 39.9
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 9.2e-106 387.9 493 46.0
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 3.5e-105 386.0 427 50.6
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.3e-103 379.0 674 36.8
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.2e-102 377.5 442 48.9
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.6e-102 377.1 428 49.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.4e-100 369.4 455 46.8
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.7e-100 368.6 472 44.9
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.1e-98 364.4 444 43.9
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.4e-98 363.2 472 44.5
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 9.2e-98 361.3 388 50.5
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.7e-96 357.1 469 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.8e-93 347.1 471 43.1
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.8e-93 347.1 432 44.0
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.4e-90 337.4 417 47.2
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 5.0e-88 328.9 470 39.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.2e-81 307.8 165 83.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 9.5e-79 298.1 168 80.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 6.4e-75 285.4 135 99.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 7.1e-58 228.8 146 73.3
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.2e-57 228.0 327 42.8
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.6e-54 216.5 353 38.0
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.4e-53 213.8 132 73.5
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.0e-52 210.7 136 72.8
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.6e-52 210.3 144 67.4
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 2.1e-49 200.7 135 68.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 9.6e-47 191.8 136 67.6
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.5e-41 173.3 121 66.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.2e-34 149.1 135 54.1
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.7e-33 147.1 83 80.7
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.9e-31 141.0 68 95.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 9.1e-29 132.1 66 87.9
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.1e-21 107.1 56 87.5
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.1e-21 107.1 56 87.5
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.3e-21 106.3 56 87.5
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.3e-21 106.3 62 75.8
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.9e-21 105.9 56 87.5
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-20 104.0 56 85.7
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.1e-17 92.8 51 86.3
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.1e-17 92.8 51 86.3
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.9e-11 73.9 71 49.3
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 6.5e-11 72.8 31 96.8
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 8.5e-11 72.4 62 51.6
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.9e-10 71.2 31 93.5
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.4e-08 65.1 131 30.5
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.2e-08 63.2 134 32.1
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.4e-07 60.1 56 58.9
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 5.7e-07 59.7 61 54.1
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 3.7e-06 57.0 138 21.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.8e-06 56.6 150 25.3


User provided reference genes

Program Settings