Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A786G23 Lonicera japonica HOM05D011954 ORTHO05D014236 5.5e-166 587.8 351 100.0
Lj1P785T45 Lonicera japonica HOM05D011954 ORTHO05D014236 5.7e-54 215.7 247 63.2
Lj1A773T40 Lonicera japonica HOM05D011954 ORTHO05D014236 1.2e-24 118.2 179 41.3
Lj1A773T41 Lonicera japonica HOM05D011954 ORTHO05D014236 1.2e-24 118.2 186 39.8
Lj1A777T20 Lonicera japonica HOM05D011954 ORTHO05D014236 2.1e-24 117.5 179 40.8
Lj1A778T39 Lonicera japonica HOM05D011954 ORTHO05D014236 2.8e-24 117.1 182 40.7
Lj1A748T28 Lonicera japonica HOM05D011954 ORTHO05D014236 4.4e-22 109.8 198 37.4
Lj1A798T45 Lonicera japonica HOM05D011954 ORTHO05D014236 1.1e-20 105.1 129 42.6
Lj1A798T44 Lonicera japonica HOM05D011954 ORTHO05D014236 1.4e-20 104.8 177 36.2
Lju4319C0T1 Lonicera japonica HOM05D011954 ORTHO05D014236 5.9e-19 99.4 125 40.8
Lj4P227T37 Lonicera japonica HOM05D011954 ORTHO05D014236 7.8e-19 99.0 79 64.6
Lj1A771T10 Lonicera japonica HOM05D011954 ORTHO05D014236 5.6e-17 92.8 116 45.7
Lj1A363G10 Lonicera japonica HOM05D011954 ORTHO05D014236 5.2e-15 86.3 200 31.5
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 3.7e-13 80.1 121 37.2
Rhsim10G0206900 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.9e-12 77.8 126 38.1
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 1.6e-11 74.7 138 34.8
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 4.6e-11 73.2 125 38.4
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-10 71.6 127 34.6
Sed0001543 Sechium edule HOM05D008623 ORTHO05D007789 8.6e-10 68.9 153 30.7
Rhsim10G0207200 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.1e-09 68.6 137 34.3
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 1.5e-09 68.2 132 34.8
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-09 67.8 119 33.6
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 2.5e-09 67.4 163 31.9
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 7.3e-09 65.9 126 31.7
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 7.3e-09 65.9 126 31.7
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 7.3e-09 65.9 126 31.7
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 9.5e-09 65.5 126 31.7
Rhsim06G0038100 Rhododendron simsii HOM05D038451 ORTHO05D007789 9.5e-09 65.5 123 30.9
arahy.Tifrunner.gnm1.ann1.JW8DXZ Arachis hypogaea HOM05D010841 ORTHO05D007789 1.2e-08 65.1 119 33.6
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-08 65.1 126 31.0
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-08 65.1 126 31.0
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 1.6e-08 64.7 126 32.5
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 1.6e-08 64.7 126 32.5
Lj1A777G14 Lonicera japonica HOM05D011954 ORTHO05D014236 2.1e-08 64.3 107 41.1
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 2.8e-08 63.9 126 31.0
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 2.8e-08 63.9 126 31.0
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 2.8e-08 63.9 159 28.3
Duzib168G1026 Durio zibethinus HOM05D016489 ORTHO05D007789 8.1e-08 62.4 150 30.7
Duzib168G2238 Durio zibethinus HOM05D016489 ORTHO05D007789 8.1e-08 62.4 150 30.7
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.1e-07 62.0 160 30.6
Cc02_g14140 Coffea canephora HOM05D039367 ORTHO05D044651 1.8e-07 61.2 182 30.8
Cc02_g14170 Coffea canephora HOM05D039367 ORTHO05D044651 1.8e-07 61.2 182 30.8
PGR004G2477 Punica granatum HOM05D056874 ORTHO05D050610 1.8e-07 61.2 124 35.5
Rhsim04G0228600 Rhododendron simsii HOM05D009663 ORTHO05D011812 1.8e-07 61.2 125 28.0
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 2.3e-07 60.8 126 30.2
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 4.0e-07 60.1 128 29.7
Rhsim13G0019200 Rhododendron simsii HOM05D009663 ORTHO05D007789 4.0e-07 60.1 125 32.8
Rhsim13G0014700 Rhododendron simsii HOM05D009663 ORTHO05D007789 5.2e-07 59.7 126 31.7
arahy.Tifrunner.gnm1.ann1.B6M36H Arachis hypogaea HOM05D010841 ORTHO05D007789 6.8e-07 59.3 112 34.8
arahy.Tifrunner.gnm1.ann1.J4CNX7 Arachis hypogaea HOM05D010841 ORTHO05D007789 6.8e-07 59.3 119 31.9
Peaxi162Scf00045g00629 Petunia axillaris HOM05D010354 ORTHO05D012840 6.8e-07 59.3 136 33.1
arahy.Tifrunner.gnm1.ann1.52E6WN Arachis hypogaea HOM05D010841 ORTHO05D007789 8.9e-07 58.9 115 33.0
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 8.9e-07 58.9 138 33.3
vmacro05103 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 8.9e-07 58.9 126 33.3
CSS0021925 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.5e-06 58.2 130 30.8
arahy.Tifrunner.gnm1.ann1.E31NWF Arachis hypogaea HOM05D010841 ORTHO05D007789 2.0e-06 57.8 112 33.9
CSS0032446 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.0e-06 57.8 130 30.8
Rhsim04G0228800 Rhododendron simsii HOM05D009663 ORTHO05D011812 2.0e-06 57.8 209 23.9
Rhsim06G0038400 Rhododendron simsii HOM05D038451 ORTHO05D007789 2.0e-06 57.8 123 25.2
vmacro01230 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 2.0e-06 57.8 140 28.6
CSS0013123 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.6e-06 57.4 130 30.8
Rhsim06G0172100 Rhododendron simsii HOM05D000032 ORTHO05D009914 3.4e-06 57.0 128 32.0
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 4.4e-06 56.6 148 27.7
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 4.4e-06 56.6 209 29.2
Rhsim12G0082100 Rhododendron simsii HOM05D009663 ORTHO05D007789 4.4e-06 56.6 130 30.0


User provided reference genes

Program Settings