Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-156 555.1 270 100.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.5e-65 253.8 276 52.2
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 9.4e-65 251.1 278 50.4
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.8e-63 246.9 273 49.8
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.4e-62 241.5 273 49.8
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.4e-60 237.3 276 47.8
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.8e-60 236.9 276 49.6
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 5.3e-60 235.3 277 48.7
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 2.2e-58 229.9 289 46.4
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 8.3e-53 211.5 273 43.6
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.8e-52 210.3 276 42.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 3.1e-52 209.5 278 43.2
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 4.1e-52 209.1 276 41.7
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.3e-50 204.1 296 40.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.1e-49 201.1 265 41.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 5.5e-49 198.7 276 40.6
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.1e-48 196.8 278 40.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.6e-48 196.1 96 92.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.0e-46 190.3 112 84.8
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.6e-46 189.9 298 38.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 2.6e-46 189.9 277 39.7
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 8.3e-45 184.9 264 40.5
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.8e-44 183.7 276 40.9
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.4e-44 183.3 273 41.0
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.4e-44 183.3 269 40.5
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.1e-44 182.6 276 39.1
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.1e-44 182.6 275 38.5
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.6e-43 180.6 290 39.3
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.6e-43 180.6 269 40.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 7.7e-43 178.3 267 39.7
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.7e-42 177.2 262 37.8
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.3e-42 176.8 295 36.3
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.9e-42 176.4 282 39.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 6.6e-42 175.3 276 38.8
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.1e-41 174.5 283 39.2
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 3.3e-41 172.9 281 38.4
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 4.2e-41 172.6 277 40.4
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.2e-41 171.8 287 36.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 7.2e-41 171.8 286 37.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-40 171.0 297 36.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.1e-40 170.2 275 36.4
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.4e-39 167.5 279 39.1
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.2e-38 164.5 273 37.0
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.5e-38 164.1 261 36.4
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.0e-38 163.7 271 36.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.6e-38 163.3 329 34.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 7.5e-38 161.8 274 38.3
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 3.7e-37 159.5 240 37.9
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.4e-37 158.7 273 35.9
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 8.3e-37 158.3 239 38.9
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 8.3e-37 158.3 277 33.9
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.4e-36 157.5 275 36.7
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 3.2e-36 156.4 296 34.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 9.2e-36 154.8 261 37.5
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 9.2e-36 154.8 271 39.1
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.2e-35 154.5 271 35.8
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.6e-35 154.1 278 37.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.6e-35 154.1 276 38.4
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 2.9e-34 149.8 245 37.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.9e-34 149.4 275 35.3
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 8.6e-34 148.3 260 38.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.5e-33 146.7 215 39.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 3.3e-33 146.4 267 36.0
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.6e-33 145.6 270 35.2
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 5.6e-33 145.6 251 35.1
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 5.6e-33 145.6 275 38.9
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 9.5e-33 144.8 256 37.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.5e-33 144.8 256 37.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.2e-32 144.4 283 33.9
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 4.7e-32 142.5 273 37.0
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 8.0e-32 141.7 278 36.0
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.0e-31 141.4 214 38.8
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.4e-31 141.0 214 38.3
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.4e-31 141.0 291 35.7
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-31 140.2 213 38.5
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 8.9e-31 138.3 247 38.9
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 7.5e-30 135.2 267 36.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.8e-30 134.8 213 37.6
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.7e-29 134.0 248 37.1
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.4e-28 131.0 293 34.8
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.1e-28 129.4 250 33.2
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.1e-28 129.4 215 34.9
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 6.0e-27 125.6 291 32.3
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.8e-27 125.2 284 35.2
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.8e-24 116.7 273 31.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.2e-22 111.3 221 32.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.6e-22 110.2 248 31.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.9e-21 106.7 279 34.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.9e-21 106.7 279 34.1
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.9e-21 106.7 205 30.7
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.9e-20 104.0 282 32.3
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.1e-20 102.8 256 32.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.6e-19 100.9 320 29.4
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.6e-19 100.9 146 37.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.3e-18 97.1 240 31.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.0e-18 96.7 269 32.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.0e-18 96.7 254 32.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.9e-18 96.3 290 31.7
Lju4319C0G3 Lonicera japonica HOM05D024127 ORTHO05D006768 3.9e-18 96.3 62 77.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 5.1e-18 95.9 205 32.7
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 5.1e-18 95.9 234 30.3
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.1e-18 95.9 224 31.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.9e-17 94.0 247 31.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-17 93.6 229 31.0
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.5e-17 93.6 229 31.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 4.3e-17 92.8 110 43.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 5.6e-17 92.4 219 32.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-16 90.5 95 50.5
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.8e-16 90.1 239 29.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.6e-16 89.7 243 30.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 6.2e-16 89.0 224 33.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.4e-15 87.8 257 30.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-15 87.4 245 30.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 5.2e-15 85.9 208 32.2
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 8.9e-15 85.1 246 31.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.5e-14 84.3 246 31.3
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.5e-14 84.3 165 31.5
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.0e-14 84.0 245 29.8
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.4e-13 79.0 269 29.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.4e-12 77.8 70 60.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 5.4e-12 75.9 139 36.7
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-11 74.7 168 31.0
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 4.0e-07 59.7 55 60.0
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.6e-06 55.5 89 36.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.6e-06 55.5 89 36.0


User provided reference genes

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