Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 5.0e-128 461.1 225 100.0
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.8e-112 408.3 225 86.7
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 4.4e-108 394.8 225 84.4
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.3e-107 393.3 222 85.6
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 6.3e-107 391.0 225 82.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 4.1e-106 388.3 223 83.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 5.4e-106 387.9 223 80.7
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 5.9e-105 384.4 225 80.4
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 7.7e-105 384.0 225 80.9
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 7.7e-105 384.0 225 81.8
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.0e-104 383.6 222 81.5
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.3e-104 383.3 225 80.4
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.7e-104 382.9 223 83.0
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.9e-104 382.1 225 81.8
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 6.6e-104 380.9 225 80.0
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 8.6e-104 380.6 222 82.0
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.9e-103 379.4 224 81.2
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.9e-103 379.4 224 81.2
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 2.5e-103 379.0 223 81.6
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 3.3e-103 378.6 225 80.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 3.3e-103 378.6 222 81.1
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.3e-103 378.6 223 79.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 4.2e-103 378.3 221 81.4
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 5.6e-103 377.9 224 80.4
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 9.5e-103 377.1 225 79.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 9.5e-103 377.1 224 80.8
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 9.5e-103 377.1 224 80.8
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 9.5e-103 377.1 224 80.8
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.5e-103 377.1 225 80.0
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.2e-102 376.7 225 79.1
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.2e-102 376.7 225 80.0
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.6e-102 376.3 224 79.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.8e-102 375.6 225 78.7
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 2.8e-102 375.6 225 78.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 3.6e-102 375.2 222 81.5
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 3.6e-102 375.2 222 81.5
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 3.6e-102 375.2 226 79.6
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 4.7e-102 374.8 224 80.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 4.7e-102 374.8 225 79.1
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 6.1e-102 374.4 225 78.2
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.1e-102 374.4 224 79.9
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 6.1e-102 374.4 223 77.6
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 6.1e-102 374.4 225 78.7
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 8.0e-102 374.0 225 79.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 8.0e-102 374.0 225 79.1
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.0e-101 373.6 221 81.4
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.0e-101 373.6 225 79.6
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.0e-101 373.6 224 78.6
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.8e-101 372.9 225 78.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.8e-101 372.9 222 79.3
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.8e-101 372.9 225 78.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 2.3e-101 372.5 222 79.3
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.3e-101 372.5 224 79.5
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.3e-101 372.5 222 77.9
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.3e-101 372.5 225 78.2
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.0e-101 372.1 224 79.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 6.8e-101 370.9 224 77.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 6.8e-101 370.9 222 78.8
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 6.8e-101 370.9 222 78.8
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 6.8e-101 370.9 223 78.5
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 6.8e-101 370.9 223 78.5
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-100 370.2 223 78.0
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-100 370.2 224 77.2
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.5e-100 369.8 225 78.7
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.0e-100 369.4 225 77.3
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.6e-100 369.0 225 78.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.4e-100 368.6 223 76.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.7e-100 367.9 223 76.7
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.7e-100 367.9 223 76.2
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 5.7e-100 367.9 225 77.8
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 7.5e-100 367.5 222 77.9
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 7.5e-100 367.5 224 77.2
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 7.5e-100 367.5 222 77.5
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 9.8e-100 367.1 223 76.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 9.8e-100 367.1 222 78.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.7e-99 366.3 223 77.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.7e-99 366.3 222 78.4
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 2.9e-99 365.5 223 76.7
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.9e-99 365.5 223 76.2
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 6.4e-99 364.4 223 76.2
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 6.4e-99 364.4 224 76.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 8.3e-99 364.0 224 76.8
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 2.4e-98 362.5 224 77.2
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 3.2e-98 362.1 223 75.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 7.0e-98 360.9 222 77.0
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.0e-97 359.4 223 74.9
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.5e-97 358.6 223 75.3
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 3.5e-97 358.6 223 75.3
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 3.5e-97 358.6 223 75.3
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 7.8e-97 357.5 222 75.7
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 7.8e-97 357.5 224 74.1
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 1.3e-96 356.7 223 75.8
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.9e-96 355.5 224 77.2
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 2.9e-96 355.5 224 75.4
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.9e-96 355.1 224 74.6
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 6.6e-96 354.4 224 73.2
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 8.6e-96 354.0 222 75.2
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 8.6e-96 354.0 222 73.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.9e-95 352.8 224 75.0
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 7.3e-95 350.9 222 74.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 3.6e-94 348.6 225 73.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 7.5e-92 340.9 223 74.0
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 4.9e-91 338.2 240 70.8
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.7e-89 332.4 222 73.0
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 6.0e-89 331.3 224 72.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 7.8e-89 330.9 224 71.0
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.8e-89 330.9 222 70.7
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.1e-87 327.0 211 73.5
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.6e-86 323.2 207 72.5
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.6e-86 322.0 348 51.1
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 4.0e-85 318.5 222 68.9
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 5.8e-84 314.7 224 67.9
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 2.4e-82 309.3 224 64.7
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 4.6e-81 305.1 191 75.9
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.6e-81 305.1 226 66.8
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 4.3e-79 298.5 222 63.5
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 5.6e-79 298.1 222 63.1
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.7e-75 286.6 175 76.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-72 276.6 230 60.0
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 1.5e-71 273.5 223 61.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 9.6e-71 270.8 225 61.3
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.8e-70 269.2 154 83.8
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 5.1e-64 248.4 154 75.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 8.1e-62 241.1 223 53.4
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-59 233.4 241 51.0
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.9e-59 232.6 210 55.7
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.6e-56 221.5 154 65.6
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.1e-53 214.2 135 77.0
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.2e-52 210.7 110 90.9
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.9e-51 206.1 204 51.5
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.9e-47 193.4 223 43.0
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 2.4e-45 186.4 124 71.8
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.4e-44 182.6 220 43.2
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.3e-43 180.6 219 44.3
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.0e-40 171.0 126 65.9
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 8.7e-40 167.9 90 84.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 3.2e-34 149.4 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-32 144.4 84 83.3
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-29 134.4 91 71.4
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-28 129.0 72 79.2
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-28 129.0 73 78.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.7e-24 115.2 213 33.3
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 8.5e-19 98.2 59 79.7
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.9e-16 89.4 49 79.6
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 1.1e-15 87.8 48 79.2
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.4e-15 85.9 86 52.3
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-12 77.0 93 50.5
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 2.9e-11 73.2 238 29.8
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.3e-08 63.5 223 28.7
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 2.3e-08 63.5 223 28.7
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 4.0e-08 62.8 232 27.6
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 6.7e-08 62.0 223 26.9
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.5e-07 60.8 225 28.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.0e-07 60.5 195 26.7
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 3.3e-07 59.7 227 24.2
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.3e-07 59.7 232 26.7
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 4.4e-07 59.3 223 26.9
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.7e-07 58.9 28 92.9
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 5.7e-07 58.9 232 26.7
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 7.5e-07 58.5 227 23.8
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 9.7e-07 58.2 231 26.0
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 9.7e-07 58.2 243 25.9
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 1.7e-06 57.4 227 26.0
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.2e-06 57.0 220 28.2
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 2.8e-06 56.6 228 28.5
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 3.7e-06 56.2 227 23.3
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 4.8e-06 55.8 227 23.3
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 4.8e-06 55.8 227 23.3
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.3e-06 55.5 37 70.3
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 6.3e-06 55.5 240 29.2
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 6.3e-06 55.5 232 26.7
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 6.3e-06 55.5 232 27.6
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 8.2e-06 55.1 69 40.6
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 8.2e-06 55.1 231 28.1


User provided reference genes

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