Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 5.6e-67 257.7 150 100.0
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 2.8e-58 228.8 142 90.1
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 6.2e-58 227.6 142 86.6
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.0e-57 224.9 142 88.0
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 4.4e-56 221.5 144 83.3
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 9.9e-56 220.3 143 86.0
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.8e-55 218.4 145 85.5
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.9e-54 216.1 145 84.8
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.7e-53 212.2 145 88.3
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.1e-50 202.6 148 85.8
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 4.7e-50 201.4 142 85.2
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 8.1e-50 200.7 143 78.3
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 8.1e-50 200.7 141 85.8
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.1e-50 200.7 147 81.0
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 3.1e-49 198.7 146 75.3
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 5.2e-49 198.0 143 83.9
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 9.0e-49 197.2 142 75.4
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.5e-48 196.4 142 74.6
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.0e-48 196.1 142 73.9
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 4.4e-48 194.9 126 93.7
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 5.8e-48 194.5 142 75.4
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 7.6e-48 194.1 143 82.5
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 9.9e-48 193.7 151 79.5
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.7e-47 193.0 141 73.0
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 2.2e-47 192.6 147 80.3
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 4.9e-47 191.4 132 83.3
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 9.3e-46 187.2 145 73.8
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 2.1e-45 186.0 142 71.8
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 4.6e-45 184.9 142 71.1
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 6.0e-45 184.5 145 72.4
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 1.7e-44 183.0 144 72.2
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.7e-44 183.0 144 79.2
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 2.3e-44 182.6 146 79.5
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 3.0e-44 182.2 143 79.0
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 3.9e-44 181.8 144 78.5
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 5.1e-44 181.4 142 69.7
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 8.7e-44 180.6 143 78.3
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 8.7e-44 180.6 149 79.2
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 8.7e-44 180.6 147 74.8
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 1.5e-43 179.9 148 75.0
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 1.5e-43 179.9 144 72.9
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 7.3e-43 177.6 146 74.7
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.6e-42 176.4 146 74.7
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.6e-42 175.3 149 73.2
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 8.1e-42 174.1 147 70.1
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 1.1e-41 173.7 146 68.5
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.4e-41 173.3 143 67.8
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 2.4e-41 172.6 142 69.7
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.4e-41 172.6 149 77.2
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 4.0e-41 171.8 107 91.6
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 5.3e-41 171.4 148 66.9
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 5.3e-41 171.4 146 68.5
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.2e-40 170.2 153 68.6
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 2.0e-40 169.5 150 65.3
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 7.6e-40 167.5 142 69.7
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 4.9e-39 164.9 142 71.1
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 1.9e-38 162.9 144 64.6
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 9.3e-38 160.6 95 88.4
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 9.3e-38 160.6 155 70.3
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 9.3e-38 160.6 147 64.6
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.0e-36 157.1 147 70.1
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-36 156.4 143 68.5
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 2.3e-36 156.0 152 65.8
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.0e-36 155.6 106 85.8
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 5.1e-36 154.8 145 65.5
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 5.1e-36 154.8 149 61.1
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.5e-35 153.3 144 68.8
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 3.3e-35 152.1 144 65.3
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 4.3e-35 151.8 147 63.9
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 5.6e-35 151.4 104 76.0
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 7.4e-35 151.0 148 66.9
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 2.1e-34 149.4 136 66.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 2.1e-34 149.4 148 63.5
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 3.7e-34 148.7 144 63.2
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 3.7e-34 148.7 144 64.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 3.7e-34 148.7 148 66.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.8e-33 146.4 106 74.5
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.2e-32 143.7 147 63.9
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 1.5e-32 143.3 105 81.0
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 2.6e-32 142.5 144 65.3
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 2.6e-32 142.5 143 64.3
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.4e-32 142.1 151 61.6
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.6e-32 141.0 143 59.4
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.9e-31 139.0 154 60.4
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 2.9e-31 139.0 146 60.3
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 8.4e-31 137.5 147 63.3
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 2.4e-30 136.0 148 61.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-30 135.6 104 70.2
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 3.2e-30 135.6 104 70.2
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 3.2e-30 135.6 104 70.2
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 4.2e-30 135.2 104 72.1
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 4.2e-30 135.2 106 70.8
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 5.5e-30 134.8 148 64.9
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 7.1e-30 134.4 95 73.7
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 7.1e-30 134.4 104 70.2
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 7.1e-30 134.4 104 70.2
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 7.1e-30 134.4 104 70.2
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 7.1e-30 134.4 104 70.2
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 1.2e-29 133.7 107 70.1
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 1.2e-29 133.7 107 70.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 1.2e-29 133.7 104 69.2
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 1.6e-29 133.3 134 65.7
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.6e-29 133.3 106 66.0
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 2.1e-29 132.9 105 77.1
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 2.1e-29 132.9 117 72.6
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 6.0e-29 131.3 147 60.5
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 6.0e-29 131.3 124 59.7
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 6.0e-29 131.3 145 56.6
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 6.0e-29 131.3 144 59.7
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 7.9e-29 131.0 140 58.6
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.3e-28 130.2 120 74.2
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 1.8e-28 129.8 177 55.4
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.9e-28 128.6 118 61.0
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 1.5e-27 126.7 149 59.7
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 1.9e-27 126.3 148 61.5
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 1.9e-27 126.3 146 62.3
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.9e-27 126.3 197 47.2
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 5.6e-27 124.8 140 56.4
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 1.3e-26 123.6 147 61.2
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.8e-26 122.5 94 68.1
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 4.8e-26 121.7 148 56.1
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 4.8e-26 121.7 148 54.7
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 6.2e-26 121.3 144 54.9
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 6.2e-26 121.3 142 54.2
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 8.2e-26 120.9 183 53.0
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.1e-25 120.6 95 67.4
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.4e-25 119.4 147 53.1
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 5.3e-25 118.2 102 64.7
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 9.0e-25 117.5 141 61.7
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 9.0e-25 117.5 144 52.1
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.2e-24 117.1 241 39.4
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.5e-24 116.7 130 64.6
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 7.6e-24 114.4 130 63.8
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 1.3e-23 113.6 130 63.8
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 4.9e-23 111.7 144 52.8
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 6.5e-23 111.3 144 59.7
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.5e-22 109.4 148 51.4
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 2.5e-22 109.4 172 46.5
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.2e-22 109.0 94 70.2
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 5.5e-22 108.2 137 59.9
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 9.3e-22 107.5 143 53.1
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 2.1e-21 106.3 150 56.0
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.7e-21 105.9 150 53.3
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 4.6e-21 105.1 155 50.3
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 6.0e-21 104.8 148 47.3
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 6.0e-21 104.8 148 53.4
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 6.0e-21 104.8 148 53.4
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 1.0e-20 104.0 144 47.2
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.1e-19 100.5 89 66.3
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.5e-19 100.1 149 51.0
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 1.5e-19 100.1 102 52.9
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.5e-19 100.1 112 56.2
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.5e-19 100.1 74 75.7
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 4.3e-19 98.6 128 59.4
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 8.2e-18 94.4 145 46.9
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.4e-17 93.6 145 46.9
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 2.4e-17 92.8 152 48.7
QL03p061482 Quercus lobata HOM05D003422 ORTHO05D034179 2.4e-17 92.8 120 56.7
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 3.1e-17 92.4 148 47.3
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 5.3e-17 91.7 123 43.9
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 6.5e-15 84.7 156 44.9
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 4.2e-14 82.0 129 55.0
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 3.6e-13 79.0 116 50.9
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.3e-12 76.3 71 60.6
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.0e-12 75.9 119 46.2
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 5.1e-12 75.1 59 69.5
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 5.7e-11 71.6 73 57.5
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.4e-09 67.0 37 91.9
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 2.4e-09 66.2 84 51.2
Medtr1g048860 Medicago truncatula HOM05D003422 ORTHO05D004263 5.3e-09 65.1 148 44.6
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.2e-08 63.9 63 60.3
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 2.0e-08 63.2 58 63.8
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.5e-08 62.0 32 96.9
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 7.7e-08 61.2 33 93.9
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 6.5e-07 58.2 125 39.2
C01p42710 Brassica napus HOM05D003422 ORTHO05D028074 1.4e-06 57.0 78 51.3
BolC1t04226H Brassica oleracea HOM05D003422 ORTHO05D028074 1.4e-06 57.0 78 51.3
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.4e-06 57.0 147 34.7
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 1.9e-06 56.6 135 37.8
BcaB05g23724 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-06 55.8 79 54.4
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 7.2e-06 54.7 112 42.0


User provided reference genes

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