Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A743T9 Lonicera japonica HOM05D000038 ORTHO05D048410 2.2e-81 305.4 144 100.0
Lj1C743G8 Lonicera japonica HOM05D000038 ORTHO05D048410 3.2e-27 125.6 60 100.0
Gorai.008G151000 Gossypium raimondii HOM05D000038 ORTHO05D000689 2.5e-16 89.4 184 33.2
Sed0024754 Sechium edule HOM05D000013 ORTHO05D000689 9.0e-14 80.9 147 34.7
Sed0005035 Sechium edule HOM05D000013 ORTHO05D000689 1.5e-13 80.1 153 33.3
Aqoxy5G03337 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 2.6e-13 79.3 191 30.4
Haze_13035 Corylus avellana HOM05D000038 ORTHO05D000689 2.6e-13 79.3 160 31.2
Haze_13039 Corylus avellana HOM05D000038 ORTHO05D000689 2.2e-12 76.3 246 26.8
Sc12g0002650 Simmondsia chinensis HOM05D000038 ORTHO05D000689 2.2e-12 76.3 89 41.6
RcHm_v2.0_Chr4g0405661 Rosa chinensis HOM05D000013 ORTHO05D000011 1.4e-11 73.6 87 44.8
Lsat_1_v5_gn_3_41120 Lactuca sativa HOM05D000038 ORTHO05D000689 2.4e-11 72.8 82 43.9
Lsat_1_v5_gn_3_41941 Lactuca sativa HOM05D000038 ORTHO05D000689 2.4e-11 72.8 82 43.9
Peaxi162Scf00560g00065 Petunia axillaris HOM05D000013 ORTHO05D307168 2.4e-11 72.8 185 29.7
QL08p036078 Quercus lobata HOM05D000013 ORTHO05D000689 7.1e-11 71.2 92 40.2
QL08p036241 Quercus lobata HOM05D000038 ORTHO05D000689 1.2e-10 70.5 92 39.1
Thecc.07G067200 Theobroma cacao HOM05D000013 ORTHO05D000011 2.1e-10 69.7 122 34.4
Actinidia18738 Actinidia chinensis HOM05D000013 ORTHO05D000689 2.7e-10 69.3 92 39.1
Lj3g0020922 Lotus japonicus HOM05D000038 ORTHO05D000689 2.7e-10 69.3 120 34.2
QL11p000238 Quercus lobata HOM05D000013 ORTHO05D000689 2.7e-10 69.3 92 38.0
MD09G1095200 Malus domestica HOM05D000013 ORTHO05D000011 4.6e-10 68.6 86 39.5
TAR627G0397 Trochodendron aralioides HOM05D000013 ORTHO05D010973 4.6e-10 68.6 120 34.2
TAR647G0001 Trochodendron aralioides HOM05D000013 ORTHO05D000011 4.6e-10 68.6 120 35.0
Lj3g0007077 Lotus japonicus HOM05D000038 ORTHO05D000689 6.0e-10 68.2 87 39.1
TAR627G1047 Trochodendron aralioides HOM05D000013 ORTHO05D000011 6.0e-10 68.2 106 36.8
vmacro09580 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 6.0e-10 68.2 102 36.3
Psat5g267480 Pisum sativum HOM05D000038 ORTHO05D000689 7.9e-10 67.8 92 37.0
RhsimUnG0173200 Rhododendron simsii HOM05D000013 ORTHO05D010973 1.0e-09 67.4 91 37.4
Peaxi162Scf00560g00731 Petunia axillaris HOM05D000038 ORTHO05D000689 1.8e-09 66.6 82 40.2
Rhsim04G0061400 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.8e-09 66.6 91 38.5
Oeu059071.3 Olea europaea HOM05D000013 ORTHO05D000689 2.3e-09 66.2 93 38.7
ECA233G2396 Erigeron canadensis HOM05D000038 ORTHO05D000689 3.0e-09 65.9 115 33.9
TWI75G1852 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 3.0e-09 65.9 120 31.7
CSS0028738 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 3.9e-09 65.5 93 38.7
FvH4_6g44064 Fragaria vesca HOM05D000013 ORTHO05D000011 3.9e-09 65.5 91 36.3
Manes.13G076800 Manihot esculenta HOM05D000038 ORTHO05D000689 3.9e-09 65.5 120 31.7
TAR627G0962 Trochodendron aralioides HOM05D000013 ORTHO05D000689 3.9e-09 65.5 120 31.7
CSS0007750 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.1e-09 65.1 93 38.7
CSS0025699 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.1e-09 65.1 93 38.7
CSS0050341 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.1e-09 65.1 93 38.7
FAN02G0143 Fragaria x ananassa HOM05D000013 ORTHO05D000689 5.1e-09 65.1 91 36.3
FAN05G0868 Fragaria x ananassa HOM05D000013 ORTHO05D000011 5.1e-09 65.1 91 36.3
Lj2C278G7 Lonicera japonica HOM05D000013 ORTHO05D000011 5.1e-09 65.1 153 30.7
Thecc.07G067000 Theobroma cacao HOM05D000013 ORTHO05D000011 5.1e-09 65.1 90 36.7
Ah.01g015240 Amaranthus hybridus HOM05D000038 ORTHO05D000689 6.7e-09 64.7 87 40.2
Haze_13033 Corylus avellana HOM05D000038 ORTHO05D000689 6.7e-09 64.7 195 28.2
Haze_13038 Corylus avellana HOM05D000013 ORTHO05D000689 6.7e-09 64.7 92 39.1
ECA246G0686 Erigeron canadensis HOM05D000038 ORTHO05D000689 6.7e-09 64.7 81 40.7
VMungo1127G0525 Vigna mungo HOM05D000038 ORTHO05D000689 6.7e-09 64.7 90 36.7
CSS0001511 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 8.7e-09 64.3 92 37.0
TAR627G0520 Trochodendron aralioides HOM05D000013 ORTHO05D000011 8.7e-09 64.3 118 32.2
Cpa.g.sc34.57 Carica papaya HOM05D000038 ORTHO05D000689 1.1e-08 63.9 91 36.3
Lsat_1_v5_gn_3_41900 Lactuca sativa HOM05D000038 ORTHO05D000689 1.1e-08 63.9 82 37.8
RhsimUnG0173300 Rhododendron simsii HOM05D000013 ORTHO05D010973 1.1e-08 63.9 92 40.2
RhsimUnG0256400 Rhododendron simsii HOM05D000013 ORTHO05D000011 1.1e-08 63.9 92 37.0
SGA_v2.0_scaffold34G13902 Striga asiatica HOM05D000038 ORTHO05D000689 1.1e-08 63.9 118 33.9
TAR627G0076 Trochodendron aralioides HOM05D000013 ORTHO05D000011 1.1e-08 63.9 120 31.7
CSS0040962 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000689 1.5e-08 63.5 81 39.5
Haze_13034 Corylus avellana HOM05D000038 ORTHO05D000689 1.5e-08 63.5 81 42.0
RcHm_v2.0_Chr2g0161191 Rosa chinensis HOM05D000038 ORTHO05D000689 1.5e-08 63.5 88 39.8
EL10Ac9g20765 Beta vulgaris HOM05D000038 ORTHO05D000689 1.9e-08 63.2 97 37.1
CSS0009187 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.9e-08 63.2 82 40.2
CSS0028698 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.9e-08 63.2 82 40.2
CANSAT64G2784 Cannabis sativa HOM05D000038 ORTHO05D000689 1.9e-08 63.2 85 35.3
AUR62037358 Chenopodium quinoa HOM05D000038 ORTHO05D000689 1.9e-08 63.2 113 33.6
Lj1P744T18 Lonicera japonica HOM05D000013 ORTHO05D000689 1.9e-08 63.2 92 34.8
HanXRQChr17g0542511 Helianthus annuus HOM05D000038 ORTHO05D000689 2.5e-08 62.8 85 37.6
Lalb_Chr14g0366491 Lupinus albus HOM05D000013 ORTHO05D000689 2.5e-08 62.8 107 35.5
Manes.14G083900 Manihot esculenta HOM05D000013 ORTHO05D000011 2.5e-08 62.8 92 34.8
Medtr2g089360 Medicago truncatula HOM05D000038 ORTHO05D000689 2.5e-08 62.8 92 33.7
Psat5g267640 Pisum sativum HOM05D000038 ORTHO05D000689 2.5e-08 62.8 118 34.7
Rhsim04G0060800 Rhododendron simsii HOM05D000038 ORTHO05D000689 3.3e-08 62.4 86 40.7
HPP92_014092 Vanilla planifolia HOM05D000013 ORTHO05D000689 3.3e-08 62.4 114 36.0
Ah.01g015230 Amaranthus hybridus HOM05D000038 ORTHO05D000689 4.3e-08 62.0 107 33.6
AUR62033724 Chenopodium quinoa HOM05D000038 ORTHO05D000689 4.3e-08 62.0 86 38.4
TAR452G0005 Trochodendron aralioides HOM05D000038 ORTHO05D000689 4.3e-08 62.0 102 32.4
TAR627G0972 Trochodendron aralioides HOM05D000013 ORTHO05D000689 4.3e-08 62.0 92 31.5
CSS0028873 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.6e-08 61.6 91 37.4
CSS0030882 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.6e-08 61.6 91 37.4
Duzib213G0454 Durio zibethinus HOM05D000013 ORTHO05D000011 5.6e-08 61.6 89 34.8
Lj3g0022501 Lotus japonicus HOM05D000038 ORTHO05D000689 5.6e-08 61.6 92 30.4
Medtr2g089440 Medicago truncatula HOM05D000038 ORTHO05D000689 5.6e-08 61.6 111 35.1
Ciclev10014281m.g Citrus clementina HOM05D000038 ORTHO05D000689 7.4e-08 61.2 90 38.9
Eucgr.E03630 Eucalyptus grandis HOM05D000013 ORTHO05D000011 7.4e-08 61.2 159 30.2
Hma1.2p1_0712F.1_g207710 Hydrangea macrophylla HOM05D000013 ORTHO05D000689 7.4e-08 61.2 98 36.7
Hma1.2p1_2289F.1_g318980 Hydrangea macrophylla HOM05D000013 ORTHO05D000689 7.4e-08 61.2 98 36.7
Lj3g0004551 Lotus japonicus HOM05D000013 ORTHO05D000011 7.4e-08 61.2 92 30.4
Lj3g0016575 Lotus japonicus HOM05D000013 ORTHO05D000011 7.4e-08 61.2 92 30.4
Lj3g0027417 Lotus japonicus HOM05D000013 ORTHO05D000011 7.4e-08 61.2 92 30.4
RhsimUnG0256700 Rhododendron simsii HOM05D000013 ORTHO05D010973 7.4e-08 61.2 91 36.3
arahy.Tifrunner.gnm1.ann1.D2YYPY Arachis hypogaea HOM05D000038 ORTHO05D000689 9.6e-08 60.8 102 32.4
CSS0039385 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-07 60.5 95 37.9
Os01g0155200 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000689 1.3e-07 60.5 154 29.2
vmacro09576 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.3e-07 60.5 91 34.1
vmacro09578 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.3e-07 60.5 102 35.3
arahy.Tifrunner.gnm1.ann1.BWKC5Z Arachis hypogaea HOM05D000038 ORTHO05D000689 1.6e-07 60.1 92 32.6
arahy.Tifrunner.gnm1.ann1.M23BVA Arachis hypogaea HOM05D000038 ORTHO05D000689 1.6e-07 60.1 92 33.7
MD09G1098900 Malus domestica HOM05D000038 ORTHO05D000689 1.6e-07 60.1 80 40.0
QL05p008129 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-07 60.1 101 34.7
CANSAT64G2544 Cannabis sativa HOM05D000013 ORTHO05D000011 2.1e-07 59.7 91 34.1
MD09G1096200 Malus domestica HOM05D000013 ORTHO05D000689 2.1e-07 59.7 80 38.8
vmacro15850 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 2.1e-07 59.7 73 39.7
arahy.Tifrunner.gnm1.ann1.F8EDYM Arachis hypogaea HOM05D000038 ORTHO05D000689 2.8e-07 59.3 92 32.6
Ca_01552_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 2.8e-07 59.3 88 35.2
MD17G1087200 Malus domestica HOM05D000038 ORTHO05D000689 2.8e-07 59.3 91 36.3
Os01g0890200 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000689 2.8e-07 59.3 152 30.3
PSO675G9226 Papaver somniferum HOM05D000038 ORTHO05D000689 2.8e-07 59.3 84 38.1
Peaxi162Scf00007g00185 Petunia axillaris HOM05D000038 ORTHO05D000689 2.8e-07 59.3 86 37.2
Prupe.3G227300 Prunus persica HOM05D000038 ORTHO05D000689 2.8e-07 59.3 278 23.4
Haze_06624 Corylus avellana HOM05D000013 ORTHO05D000011 3.7e-07 58.9 107 35.5
FAN09G0976 Fragaria x ananassa HOM05D000038 ORTHO05D000689 3.7e-07 58.9 89 37.1
Lsat_1_v5_gn_3_42260 Lactuca sativa HOM05D000013 ORTHO05D000011 3.7e-07 58.9 87 36.8
Oeu029434.1 Olea europaea HOM05D000013 ORTHO05D000011 3.7e-07 58.9 203 26.1
Prupe.3G227500 Prunus persica HOM05D000038 ORTHO05D000689 3.7e-07 58.9 91 36.3
Lj3g0010627 Lotus japonicus HOM05D000038 ORTHO05D000689 4.8e-07 58.5 106 29.2
MD09G1096000 Malus domestica HOM05D000013 ORTHO05D000011 4.8e-07 58.5 79 39.2
TAR627G0198 Trochodendron aralioides HOM05D000038 ORTHO05D000689 4.8e-07 58.5 106 31.1
TAR627G0355 Trochodendron aralioides HOM05D000013 ORTHO05D000011 4.8e-07 58.5 108 31.5
Lsat_1_v5_gn_6_56400 Lactuca sativa HOM05D000038 ORTHO05D000689 6.2e-07 58.2 82 35.4
Ca_08325_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 8.1e-07 57.8 79 36.7
RcHm_v2.0_Chr2g0161171 Rosa chinensis HOM05D000038 ORTHO05D000689 8.1e-07 57.8 91 35.2
BcaB07g31620 Brassica carinata HOM05D000013 ORTHO05D000689 1.1e-06 57.4 107 32.7
Cfa000307 Carpinus fangiana HOM05D000013 ORTHO05D000011 1.1e-06 57.4 107 33.6
FAN02G3605 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.1e-06 57.4 89 36.0
Prupe.3G224900 Prunus persica HOM05D000013 ORTHO05D000011 1.1e-06 57.4 82 41.5
TAR627G0062 Trochodendron aralioides HOM05D000013 ORTHO05D000011 1.1e-06 57.4 108 30.6
EL10Ac8g19973 Beta vulgaris HOM05D000013 ORTHO05D000011 1.4e-06 57.0 70 42.9
AUR62012529 Chenopodium quinoa HOM05D000013 ORTHO05D000011 1.4e-06 57.0 74 41.9
ClCG02G001430 Citrullus lanatus HOM05D000038 ORTHO05D000689 1.4e-06 57.0 88 35.2
FAN05G5313 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.4e-06 57.0 81 35.8
FAN14G0708 Fragaria x ananassa HOM05D000038 ORTHO05D000689 1.4e-06 57.0 99 34.3
MD09G1095900 Malus domestica HOM05D000013 ORTHO05D000011 1.4e-06 57.0 109 31.2
QL05p079522 Quercus lobata HOM05D000013 ORTHO05D000011 1.4e-06 57.0 72 41.7
Thecc.06G204000 Theobroma cacao HOM05D000013 ORTHO05D000011 1.4e-06 57.0 115 34.8
Eucgr.L01531 Eucalyptus grandis HOM05D000013 ORTHO05D000011 1.8e-06 56.6 99 33.3
FvH4_6g51830 Fragaria vesca HOM05D000013 ORTHO05D000011 1.8e-06 56.6 90 33.3
Oeu050586.1 Olea europaea HOM05D000013 ORTHO05D000011 1.8e-06 56.6 75 36.0
Duzib268G1517 Durio zibethinus HOM05D000013 ORTHO05D000011 2.4e-06 56.2 79 34.2
Nn1g06848 Nelumbo nucifera HOM05D000013 ORTHO05D000011 2.4e-06 56.2 78 39.7
Peaxi162Scf00007g00177 Petunia axillaris HOM05D000013 ORTHO05D000689 2.4e-06 56.2 121 28.9
Rhsim13G0167400 Rhododendron simsii HOM05D000013 ORTHO05D000011 2.4e-06 56.2 69 40.6
GSVIVG01034405001 Vitis vinifera HOM05D000013 ORTHO05D000011 2.4e-06 56.2 156 28.2
Ca_01551_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 3.1e-06 55.8 88 34.1
FvH4_6g44310 Fragaria vesca HOM05D000038 ORTHO05D000689 3.1e-06 55.8 89 36.0
Lj1A1217G69 Lonicera japonica HOM05D000013 ORTHO05D000011 3.1e-06 55.8 72 37.5
Hund06797 Selenicereus undatus HOM05D000013 ORTHO05D000011 3.1e-06 55.8 72 38.9
Hund06800 Selenicereus undatus HOM05D000013 ORTHO05D000011 3.1e-06 55.8 72 38.9
CiPaw.04G120300 Carya illinoinensis HOM05D000013 ORTHO05D000011 4.0e-06 55.5 138 32.6
CSS0006040 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.3e-06 55.1 85 35.3
Haze_06619 Corylus avellana HOM05D000013 ORTHO05D000011 5.3e-06 55.1 108 33.3
Lsat_1_v5_gn_3_41320 Lactuca sativa HOM05D000038 ORTHO05D000689 5.3e-06 55.1 82 34.1
TPR.G18064 Trifolium pratense HOM05D000038 ORTHO05D000689 5.3e-06 55.1 92 31.5
Cfa010401 Carpinus fangiana HOM05D000013 ORTHO05D013498 6.9e-06 54.7 78 37.2
Haze_06626 Corylus avellana HOM05D000013 ORTHO05D000011 6.9e-06 54.7 107 33.6
CsaV3_7G004020 Cucumis sativus L. HOM05D000038 ORTHO05D000689 6.9e-06 54.7 90 32.2
FAN09G0671 Fragaria x ananassa HOM05D000038 ORTHO05D000689 6.9e-06 54.7 119 30.3
vmacro03767 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 6.9e-06 54.7 77 32.5
MD09G1094400 Malus domestica HOM05D000013 ORTHO05D000011 9.0e-06 54.3 109 30.3
Nitab4.5_0001822g0090 Nicotiana tabacum HOM05D000013 ORTHO05D000011 9.0e-06 54.3 96 30.2
TPR.G13415 Trifolium pratense HOM05D000013 ORTHO05D000011 9.0e-06 54.3 66 43.9


User provided reference genes

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