Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A72G57 Lonicera japonica HOM05D002343 ORTHO05D048411 2.1e-67 258.8 125 100.0
Nn1g02946 Nelumbo nucifera HOM05D002343 ORTHO05D009170 9.5e-20 100.5 67 65.7
Cc01_g17880 Coffea canephora HOM05D002343 ORTHO05D009170 1.6e-19 99.8 63 68.3
TAR636G0310 Trochodendron aralioides HOM05D002343 ORTHO05D009170 2.1e-19 99.4 66 65.2
Ciclev10020368m.g Citrus clementina HOM05D002343 ORTHO05D009170 2.8e-19 99.0 66 65.2
MSTRG.17523 Avicennia marina HOM05D002343 ORTHO05D009170 4.7e-19 98.2 64 65.6
GSVIVG01028410001 Vitis vinifera HOM05D002343 ORTHO05D009170 4.7e-19 98.2 66 65.2
vmacro02706 Vaccinium macrocarpon HOM05D002343 ORTHO05D009170 1.8e-18 96.3 64 65.6
CSS0047571 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D009170 5.2e-18 94.7 69 60.9
Sabra14G0143500 Salix brachista HOM05D002343 ORTHO05D009170 5.2e-18 94.7 66 63.6
COL.COLO4_10580 Corchorus olitorius HOM05D002343 ORTHO05D009170 6.8e-18 94.4 71 54.9
Duzib211G0473 Durio zibethinus HOM05D002343 ORTHO05D009170 8.9e-18 94.0 64 59.4
AUR62025453 Chenopodium quinoa HOM05D002343 ORTHO05D009170 1.2e-17 93.6 66 59.1
TWI12G0743 Tripterygium wilfordii HOM05D002343 ORTHO05D009170 1.2e-17 93.6 66 62.1
AUR62008787 Chenopodium quinoa HOM05D002343 ORTHO05D009170 1.5e-17 93.2 66 59.1
Haze_24686 Corylus avellana HOM05D002343 ORTHO05D009170 1.5e-17 93.2 58 67.2
Dinv16393 Davidia involucrata HOM05D002343 ORTHO05D009170 2.0e-17 92.8 61 65.6
Thecc.01G251700 Theobroma cacao HOM05D002343 ORTHO05D009170 3.4e-17 92.0 61 62.3
QL09p041187 Quercus lobata HOM05D002343 ORTHO05D009170 4.4e-17 91.7 54 70.4
SGA_v2.0_scaffold42G16179 Striga asiatica HOM05D002343 ORTHO05D009170 4.4e-17 91.7 54 72.2
DCAR_000565 Daucus carota HOM05D002343 ORTHO05D009170 5.8e-17 91.3 66 60.6
Hund18280 Selenicereus undatus HOM05D002343 ORTHO05D009170 5.8e-17 91.3 61 62.3
EL10Ac7g17672 Beta vulgaris HOM05D002343 ORTHO05D009170 7.5e-17 90.9 61 60.7
Gohir.D07G157800 Gossypium hirsutum HOM05D002343 ORTHO05D009170 1.3e-16 90.1 61 62.3
Sed0011786 Sechium edule HOM05D002343 ORTHO05D009170 1.3e-16 90.1 64 60.9
Aqoxy2G03742 Aquilegia oxysepala HOM05D002343 ORTHO05D009170 1.7e-16 89.7 74 55.4
CSS0000643 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D009170 1.7e-16 89.7 68 58.8
CAN.G771.38 Capsicum annuum HOM05D002343 ORTHO05D009170 1.7e-16 89.7 66 60.6
CiPaw.04G189300 Carya illinoinensis HOM05D002343 ORTHO05D009170 2.2e-16 89.4 55 69.1
Gorai.001G181000 Gossypium raimondii HOM05D002343 ORTHO05D009170 2.2e-16 89.4 61 62.3
PSO063G2720 Papaver somniferum HOM05D002343 ORTHO05D009170 2.2e-16 89.4 74 55.4
Rhsim13G0039600 Rhododendron simsii HOM05D002343 ORTHO05D009170 2.2e-16 89.4 61 62.3
Lsat_1_v5_gn_5_181360 Lactuca sativa HOM05D002343 ORTHO05D009170 2.9e-16 89.0 64 59.4
Sopen06g035180 Solanum pennellii HOM05D002343 ORTHO05D009170 3.7e-16 88.6 66 60.6
PGSC0003DMG400020077 Solanum tuberosum HOM05D002343 ORTHO05D009170 3.7e-16 88.6 66 60.6
Atru.chr5.1821 Acer truncatum HOM05D002343 ORTHO05D009170 6.4e-16 87.8 54 70.4
CsaV3_3G028320 Cucumis sativus L. HOM05D002343 ORTHO05D009170 6.4e-16 87.8 62 61.3
Manes.13G040400 Manihot esculenta HOM05D002343 ORTHO05D009170 6.4e-16 87.8 62 61.3
Potri.014G192300 Populus trichocarpa HOM05D002343 ORTHO05D009170 6.4e-16 87.8 59 66.1
MELO3C012844.2 Cucumis melo HOM05D002343 ORTHO05D009170 8.3e-16 87.4 62 61.3
Glyma.10G040000 Glycine max HOM05D002343 ORTHO05D009170 8.3e-16 87.4 69 58.0
Lalb_Chr06g0170691 Lupinus albus HOM05D002343 ORTHO05D009170 8.3e-16 87.4 57 64.9
Gohir.A07G151400 Gossypium hirsutum HOM05D002343 ORTHO05D009170 1.1e-15 87.0 61 59.0
Actinidia30133 Actinidia chinensis HOM05D002343 ORTHO05D009170 1.4e-15 86.7 55 65.5
Solyc06g083770.4 Solanum lycopersicum HOM05D002343 ORTHO05D009170 1.4e-15 86.7 66 59.1
TPR.G5659 Trifolium pratense HOM05D002343 ORTHO05D009170 1.4e-15 86.7 62 62.9
Ca_09652_v3 Cicer arietinum L. HOM05D002343 ORTHO05D009170 1.9e-15 86.3 54 68.5
Migut.N02226 Erythranthe guttata HOM05D002343 ORTHO05D009170 1.9e-15 86.3 55 67.3
Phvul.007G189800 Phaseolus vulgaris HOM05D002343 ORTHO05D009170 1.9e-15 86.3 69 56.5
Psat6g062920 Pisum sativum HOM05D002343 ORTHO05D009170 1.9e-15 86.3 54 68.5
PGR042G2322 Punica granatum HOM05D002343 ORTHO05D009170 1.9e-15 86.3 59 61.0
Sc24g0002550 Simmondsia chinensis HOM05D002343 ORTHO05D009170 1.9e-15 86.3 54 66.7
Oeu052076.1 Olea europaea HOM05D002343 ORTHO05D009170 2.4e-15 85.9 59 64.4
arahy.Tifrunner.gnm1.ann1.K7YURS Arachis hypogaea HOM05D002343 ORTHO05D009170 3.2e-15 85.5 54 68.5
arahy.Tifrunner.gnm1.ann1.YB8WP5 Arachis hypogaea HOM05D002343 ORTHO05D009170 3.2e-15 85.5 54 68.5
ClCG07G001360 Citrullus lanatus HOM05D002343 ORTHO05D009170 5.4e-15 84.7 53 67.9
ECA248G1644 Erigeron canadensis HOM05D002343 ORTHO05D009170 5.4e-15 84.7 85 48.2
HanXRQChr16g0505341 Helianthus annuus HOM05D002343 ORTHO05D009170 5.4e-15 84.7 69 53.6
Lj5g0027430 Lotus japonicus HOM05D002343 ORTHO05D009170 7.0e-15 84.3 69 56.5
unitig_85.g27266 Utricularia gibba HOM05D002343 ORTHO05D009170 7.0e-15 84.3 53 67.9
ATR0787G057 Amborella trichopoda HOM05D002343 ORTHO05D009170 1.2e-14 83.6 58 60.3
Cpa.g.sc87.16 Carica papaya HOM05D002343 ORTHO05D009170 2.1e-14 82.8 53 66.0
Medtr1g069575 Medicago truncatula HOM05D002343 ORTHO05D009170 2.1e-14 82.8 62 59.7
FvH4_2g20660 Fragaria vesca HOM05D002343 ORTHO05D009170 2.7e-14 82.4 57 61.4
FAN15G2269 Fragaria x ananassa HOM05D002343 ORTHO05D009170 2.7e-14 82.4 57 61.4
FAN24G0012 Fragaria x ananassa HOM05D002343 ORTHO05D009170 2.7e-14 82.4 57 61.4
RcHm_v2.0_Chr6g0286841 Rosa chinensis HOM05D002343 ORTHO05D009170 2.7e-14 82.4 55 61.8
HanXRQChr11g0336821 Helianthus annuus HOM05D002343 ORTHO05D009170 3.5e-14 82.0 57 61.4
Nitab4.5_0002538g0020 Nicotiana tabacum HOM05D002343 ORTHO05D009170 6.0e-14 81.3 66 54.5
VMungo0720G1606 Vigna mungo HOM05D002343 ORTHO05D009170 7.8e-14 80.9 63 55.6
FAN27G0237 Fragaria x ananassa HOM05D002343 ORTHO05D009170 1.0e-13 80.5 57 59.6
Peaxi162Scf00517g00019 Petunia axillaris HOM05D002343 ORTHO05D009170 1.0e-13 80.5 62 58.1
CANSAT01G2299 Cannabis sativa HOM05D002343 ORTHO05D009170 1.3e-13 80.1 85 45.9
Prupe.8G216400 Prunus persica HOM05D002343 ORTHO05D009170 1.7e-13 79.7 67 52.2
SalBow6G2699 Salvia bowleyana HOM05D002343 ORTHO05D009170 1.7e-13 79.7 53 66.0
Eucgr.K01434 Eucalyptus grandis HOM05D002343 ORTHO05D009170 2.3e-13 79.3 54 63.0
CDE02G2921 Ceratophyllum demersum HOM05D002343 ORTHO05D009170 6.6e-13 77.8 68 50.0
Nitab4.5_0003167g0110 Nicotiana tabacum HOM05D002343 ORTHO05D009170 6.6e-13 77.8 66 54.5
ATR0736G191 Amborella trichopoda HOM05D002343 ORTHO05D009170 8.6e-13 77.4 58 58.6
FAN20G2348 Fragaria x ananassa HOM05D002343 ORTHO05D009170 8.6e-13 77.4 57 57.9
Mapoly0185s0008 Marchantia polymorpha HOM05D002343 ORTHO05D009170 4.3e-12 75.1 54 59.3
Os02g0814800 Oryza sativa ssp. japonica HOM05D002343 ORTHO05D009170 4.3e-12 75.1 54 57.4
THA.LOC104801131 Tarenaya hassleriana HOM05D002343 ORTHO05D009170 9.5e-12 73.9 53 58.5
Pp3c10_14090 Physcomitrium patens HOM05D002343 ORTHO05D009170 1.6e-11 73.2 54 53.7
Pp3c10_14096 Physcomitrium patens HOM05D002343 ORTHO05D009170 1.6e-11 73.2 54 53.7
AL8G16090 Arabidopsis lyrata HOM05D002343 ORTHO05D009170 4.0e-10 68.6 65 49.2
AT5G44000 Arabidopsis thaliana HOM05D002343 ORTHO05D009170 6.8e-10 67.8 65 49.2
SEGI_01503 Sequoiadendron giganteum HOM05D002343 ORTHO05D048411 6.8e-10 67.8 52 59.6
AL2G21040 Arabidopsis lyrata HOM05D002343 ORTHO05D009170 8.9e-10 67.4 65 47.7
CARHR179340 Cardamine hirsuta HOM05D002343 ORTHO05D009170 1.5e-09 66.6 61 52.5
Sp2g08830 Schrenkiella parvula HOM05D002343 ORTHO05D009170 1.5e-09 66.6 61 52.5
Aa31LG5G3270 Aethionema arabicum HOM05D002343 ORTHO05D009170 2.6e-09 65.9 65 44.6
Thhalv10003220m.g Eutrema salsugineum HOM05D002343 ORTHO05D009170 2.6e-09 65.9 61 54.1
SMO117G0277 Selaginella moellendorffii HOM05D002343 ORTHO05D009170 3.4e-09 65.5 44 63.6
BcaC06g34605 Brassica carinata HOM05D002343 ORTHO05D009170 9.9e-09 63.9 55 49.1
C07p26570 Brassica napus HOM05D002343 ORTHO05D009170 9.9e-09 63.9 55 49.1
BolC7t43184H Brassica oleracea HOM05D002343 ORTHO05D009170 9.9e-09 63.9 55 49.1
BcaC06g31664 Brassica carinata HOM05D002343 ORTHO05D009170 1.3e-08 63.5 61 49.2
Carub.0008s0455 Capsella rubella HOM05D002343 ORTHO05D009170 1.3e-08 63.5 51 54.9
A06p47560 Brassica napus HOM05D002343 ORTHO05D009170 3.7e-08 62.0 53 50.9
BraA06t27624Z Brassica rapa HOM05D002343 ORTHO05D009170 3.7e-08 62.0 53 50.9
CSS0026267 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D009170 4.9e-08 61.6 66 51.5
CSS0035649 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D009170 3.2e-07 58.9 48 54.2
CBR_g495 Chara braunii HOM05D002343 ORTHO05D009170 2.7e-06 55.8 89 38.2


User provided reference genes

Program Settings