Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A588T24 Lonicera japonica HOM05D003251 ORTHO05D003770 5.3e-243 844.0 437 100.0
Dinv15661 Davidia involucrata HOM05D003251 ORTHO05D003770 3.3e-75 286.6 490 45.5
Hma1.2p1_2465F.1_g322630 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 1.2e-74 284.6 493 45.4
Hma1.2p1_0734F.1_g210390 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 4.7e-74 282.7 493 45.0
CSS0030132 Camellia sinensis var. sinensis HOM05D003251 ORTHO05D003770 2.1e-69 267.3 477 43.2
Actinidia35167 Actinidia chinensis HOM05D003251 ORTHO05D003770 7.8e-69 265.4 434 44.7
Actinidia18852 Actinidia chinensis HOM05D003251 ORTHO05D003770 1.9e-67 260.8 451 42.8
GSVIVG01020830001 Vitis vinifera HOM05D003251 ORTHO05D003770 7.6e-64 248.8 468 39.7
vmacro19571 Vaccinium macrocarpon HOM05D003251 ORTHO05D003770 9.9e-64 248.4 476 41.0
Lj8A97T49 Lonicera japonica HOM05D003251 ORTHO05D003770 1.2e-61 241.5 445 41.1
Oeu056851.1 Olea europaea HOM05D003251 ORTHO05D003770 8.6e-60 235.3 487 40.2
Cc08_g11770 Coffea canephora HOM05D003251 ORTHO05D003770 6.2e-58 229.2 433 41.3
Cfa023559 Carpinus fangiana HOM05D003251 ORTHO05D003770 3.1e-57 226.9 453 40.6
Rhsim05G0166800 Rhododendron simsii HOM05D003251 ORTHO05D003770 4.0e-57 226.5 466 39.9
Haze_13578 Corylus avellana HOM05D003251 ORTHO05D003770 6.8e-57 225.7 465 40.6
DCAR_013326 Daucus carota HOM05D003251 ORTHO05D003770 5.8e-56 222.6 458 40.0
Potri.002G057000 Populus trichocarpa HOM05D003251 ORTHO05D003770 7.6e-56 222.2 489 38.9
Prupe.3G178400 Prunus persica HOM05D003251 ORTHO05D003770 9.3e-54 215.3 479 39.7
Potri.005G205700 Populus trichocarpa HOM05D003251 ORTHO05D003770 1.2e-53 214.9 465 39.6
Atru.chr6.2025 Acer truncatum HOM05D003251 ORTHO05D003770 6.0e-53 212.6 471 39.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 6.0e-53 212.6 453 38.4
TAR626G1483 Trochodendron aralioides HOM05D003251 ORTHO05D003770 2.3e-52 210.7 483 38.9
MD09G1146900 Malus domestica HOM05D003251 ORTHO05D003770 3.0e-52 210.3 481 40.3
Manes.01G131000 Manihot esculenta HOM05D003251 ORTHO05D003770 3.9e-52 209.9 476 39.3
Ciclev10031282m.g Citrus clementina HOM05D003251 ORTHO05D003770 6.6e-52 209.1 470 38.9
TWI59G1422 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 4.3e-51 206.5 459 40.3
Sabra05G0156300 Salix brachista HOM05D003251 ORTHO05D003770 6.2e-50 202.6 491 37.1
Sabra02G0046300 Salix brachista HOM05D003251 ORTHO05D003770 8.1e-50 202.2 491 38.5
Sopen07g023570 Solanum pennellii HOM05D003251 ORTHO05D003770 1.1e-49 201.8 479 38.0
Solyc07g045010.3 Solanum lycopersicum HOM05D003251 ORTHO05D003770 1.4e-49 201.4 479 38.2
DCAR_023044 Daucus carota HOM05D003251 ORTHO05D003770 4.0e-49 199.9 474 37.6
CiPaw.03G190500 Carya illinoinensis HOM05D003251 ORTHO05D003770 2.0e-48 197.6 453 37.3
Nitab4.5_0008720g0010 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.0e-48 197.6 481 37.4
MD17G1133500 Malus domestica HOM05D003251 ORTHO05D003770 4.4e-48 196.4 470 39.8
QL08p045144 Quercus lobata HOM05D003251 ORTHO05D003770 6.4e-47 192.6 472 37.7
Duzib138G1023 Durio zibethinus HOM05D003251 ORTHO05D003770 1.1e-46 191.8 479 38.0
Migut.H01275 Erythranthe guttata HOM05D003251 ORTHO05D003770 2.4e-46 190.7 466 37.1
Nitab4.5_0001552g0070 Nicotiana tabacum HOM05D003251 ORTHO05D003770 4.2e-46 189.9 481 37.6
HanXRQChr17g0541161 Helianthus annuus HOM05D003251 ORTHO05D003770 2.7e-45 187.2 447 35.8
Sed0014508 Sechium edule HOM05D003251 ORTHO05D003770 6.0e-45 186.0 472 36.4
Thecc.01G167800 Theobroma cacao HOM05D003251 ORTHO05D003770 2.3e-44 184.1 463 37.6
RcHm_v2.0_Chr2g0152321 Rosa chinensis HOM05D003251 ORTHO05D003770 3.0e-44 183.7 482 38.2
Nitab4.5_0001229g0020 Nicotiana tabacum HOM05D003251 ORTHO05D003770 5.1e-44 183.0 475 38.1
COL.COLO4_04817 Corchorus olitorius HOM05D003251 ORTHO05D003770 8.7e-44 182.2 462 37.4
LjContig00049g0008406 Lotus japonicus HOM05D003251 ORTHO05D003770 1.1e-43 181.8 449 37.0
Nn7g38011 Nelumbo nucifera HOM05D003251 ORTHO05D003770 3.3e-43 180.3 493 35.7
PGSC0003DMG400028816 Solanum tuberosum HOM05D003251 ORTHO05D003770 3.3e-43 180.3 471 36.3
FAN02G1383 Fragaria x ananassa HOM05D003251 ORTHO05D003770 5.6e-43 179.5 482 38.0
Sopen12g002220 Solanum pennellii HOM05D003251 ORTHO05D003770 1.3e-42 178.3 468 36.3
FvH4_6g38770 Fragaria vesca HOM05D003251 ORTHO05D003770 1.6e-42 177.9 482 38.2
FAN14G2842 Fragaria x ananassa HOM05D003251 ORTHO05D003770 3.6e-42 176.8 482 38.2
FAN09G3830 Fragaria x ananassa HOM05D003251 ORTHO05D003770 1.1e-41 175.3 487 36.8
Cpa.g.sc50.118 Carica papaya HOM05D003251 ORTHO05D003770 1.4e-41 174.9 385 40.5
Glyma.02G283700 Glycine max HOM05D003251 ORTHO05D003770 1.4e-41 174.9 443 37.7
TWI14G0046 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 3.1e-41 173.7 459 37.5
MSTRG.14102 Avicennia marina HOM05D003251 ORTHO05D003770 4.0e-41 173.3 497 34.4
DCAR_009819 Daucus carota HOM05D003251 ORTHO05D003770 4.0e-41 173.3 439 34.6
Lsat_1_v5_gn_3_35120 Lactuca sativa HOM05D003251 ORTHO05D003770 6.9e-41 172.6 448 35.0
Gohir.A07G182600 Gossypium hirsutum HOM05D003251 ORTHO05D003770 1.5e-40 171.4 418 37.1
Nitab4.5_0003208g0060 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.0e-40 171.0 482 36.5
Manes.02G089300 Manihot esculenta HOM05D003251 ORTHO05D003770 2.6e-40 170.6 469 37.5
VMungo0647G1540 Vigna mungo HOM05D003251 ORTHO05D003770 4.5e-40 169.9 451 35.3
FAN05G1089 Fragaria x ananassa HOM05D003251 ORTHO05D003770 5.8e-40 169.5 482 37.6
Lsat_1_v5_gn_8_33181 Lactuca sativa HOM05D003251 ORTHO05D003770 7.6e-40 169.1 441 37.0
Solyc12g006270.2 Solanum lycopersicum HOM05D003251 ORTHO05D003770 7.6e-40 169.1 468 35.5
Phvul.008G195700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 9.9e-40 168.7 450 36.2
CAN.G1500.6 Capsicum annuum HOM05D003251 ORTHO05D003770 1.3e-39 168.3 468 37.0
ClCG07G010750 Citrullus lanatus HOM05D003251 ORTHO05D003770 1.3e-39 168.3 471 36.1
Glyma.14G030800 Glycine max HOM05D003251 ORTHO05D003770 1.3e-39 168.3 451 36.6
Gohir.1Z049461 Gossypium hirsutum HOM05D003251 ORTHO05D003770 1.3e-39 168.3 459 35.7
Gorai.001G211000 Gossypium raimondii HOM05D003251 ORTHO05D003770 1.7e-39 167.9 422 35.8
PGSC0003DMG400000929 Solanum tuberosum HOM05D003251 ORTHO05D003770 1.9e-38 164.5 372 38.7
MD00G1163300 Malus domestica HOM05D003251 ORTHO05D003770 3.2e-38 163.7 342 42.1
PGR042G3279 Punica granatum HOM05D003251 ORTHO05D003770 5.5e-38 162.9 467 36.2
Ca_14585_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 9.3e-38 162.2 470 34.3
Sed0023993 Sechium edule HOM05D003251 ORTHO05D003770 1.2e-37 161.8 464 36.2
Medtr5g090900 Medicago truncatula HOM05D003251 ORTHO05D003770 6.7e-36 156.0 478 32.6
ECA233G2088 Erigeron canadensis HOM05D003251 ORTHO05D003770 1.5e-35 154.8 449 34.7
SGA_v2.0_scaffold49G18391 Striga asiatica HOM05D003251 ORTHO05D003770 1.5e-35 154.8 499 32.9
THA.LOC104826243 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 3.3e-35 153.7 478 33.3
TPR.G26007 Trifolium pratense HOM05D003251 ORTHO05D003770 4.3e-35 153.3 483 32.3
Lalb_Chr04g0248951 Lupinus albus HOM05D003251 ORTHO05D003770 5.6e-35 152.9 474 32.9
Eucgr.A02029 Eucalyptus grandis HOM05D003251 ORTHO05D003770 6.2e-34 149.4 352 37.2
Eucgr.K01238 Eucalyptus grandis HOM05D003251 ORTHO05D003770 1.8e-33 147.9 431 34.1
PSO675G1700 Papaver somniferum HOM05D003251 ORTHO05D003770 2.4e-33 147.5 478 33.9
CsaV3_4G007570 Cucumis sativus L. HOM05D003251 ORTHO05D003770 2.0e-32 144.4 474 34.4
Ca_06258_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 2.6e-32 144.1 471 33.1
THA.LOC104800816 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 2.9e-31 140.6 472 33.3
BolC5t29257H Brassica oleracea HOM05D003251 ORTHO05D003770 1.1e-30 138.7 460 32.6
Glyma.18G111600 Glycine max HOM05D003251 ORTHO05D003770 1.1e-30 138.7 453 32.5
Aqoxy1G01562 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 1.4e-30 138.3 432 32.6
CANSAT64G1833 Cannabis sativa HOM05D003251 ORTHO05D003770 2.5e-30 137.5 434 32.7
MELO3C016184.2 Cucumis melo HOM05D003251 ORTHO05D003770 3.2e-30 137.1 466 33.7
Thhalv10007468m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 3.2e-30 137.1 466 33.0
BolC8t47062H Brassica oleracea HOM05D003251 ORTHO05D003770 5.5e-30 136.3 456 33.3
AT1G06660 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 7.1e-30 136.0 477 32.3
Glyma.08G306600 Glycine max HOM05D003251 ORTHO05D003770 9.3e-30 135.6 456 32.0
BraA10t42791Z Brassica rapa HOM05D003251 ORTHO05D003770 1.2e-29 135.2 462 32.7
MBI01_g06560_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 1.2e-29 135.2 477 32.5
Sp1g05380 Schrenkiella parvula HOM05D003251 ORTHO05D003770 1.2e-29 135.2 450 32.9
Aa31LG6G9100 Aethionema arabicum HOM05D003251 ORTHO05D003770 1.6e-29 134.8 441 32.7
arahy.Tifrunner.gnm1.ann1.0D8J24 Arachis hypogaea HOM05D003251 ORTHO05D003770 2.1e-29 134.4 439 32.1
HanXRQChr13g0387591 Helianthus annuus HOM05D003251 ORTHO05D003770 2.1e-29 134.4 351 35.3
A08p35910 Brassica napus HOM05D003251 ORTHO05D003770 2.7e-29 134.0 452 32.5
TPR.G25285 Trifolium pratense HOM05D003251 ORTHO05D003770 3.5e-29 133.7 453 31.6
Lj6g0022221 Lotus japonicus HOM05D003251 ORTHO05D003770 1.0e-28 132.1 419 31.7
AL1G16670 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 2.3e-28 131.0 473 32.1
arahy.Tifrunner.gnm1.ann1.RBT75F Arachis hypogaea HOM05D003251 ORTHO05D003770 3.0e-28 130.6 471 31.0
Psat5g198200 Pisum sativum HOM05D003251 ORTHO05D003770 3.9e-28 130.2 450 32.0
C05p04850 Brassica napus HOM05D003251 ORTHO05D003770 8.7e-28 129.0 462 31.6
MSTRG.14900 Avicennia marina HOM05D003251 ORTHO05D003770 2.5e-27 127.5 453 30.2
C08p02660 Brassica napus HOM05D003251 ORTHO05D003770 3.3e-27 127.1 456 32.9
BraA08t35498Z Brassica rapa HOM05D003251 ORTHO05D003770 7.4e-27 125.9 455 31.6
Carub.0001s0599 Capsella rubella HOM05D003251 ORTHO05D003770 9.6e-27 125.6 459 32.2
Medtr3g450760 Medicago truncatula HOM05D003251 ORTHO05D003770 1.6e-26 124.8 446 30.7
A10p05260 Brassica napus HOM05D003251 ORTHO05D003770 6.3e-26 122.9 462 31.6
CARHR006330 Cardamine hirsuta HOM05D003251 ORTHO05D003770 2.4e-25 120.9 431 32.5
Cc08_g11750 Coffea canephora HOM05D003251 ORTHO05D003770 5.3e-25 119.8 304 35.5
Phvul.006G023700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 9.0e-25 119.0 448 30.1
VMungo0540G1164 Vigna mungo HOM05D003251 ORTHO05D003770 1.5e-24 118.2 317 33.1
ATR0763G034 Amborella trichopoda HOM05D003251 ORTHO05D003770 4.5e-24 116.7 523 30.0
Lalb_Chr15g0081031 Lupinus albus HOM05D003251 ORTHO05D003770 5.9e-24 116.3 430 32.3
Sc06g0009760 Simmondsia chinensis HOM05D003251 ORTHO05D003770 3.8e-23 113.6 421 30.2
Gohir.D07G189401 Gossypium hirsutum HOM05D003251 ORTHO05D003770 2.5e-22 110.9 259 36.7
Thhalv10017740m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 1.3e-20 105.1 416 32.5
SGA_v2.0_scaffold73G24475 Striga asiatica HOM05D003251 ORTHO05D003770 6.7e-20 102.8 431 30.9
BcaB06g28387 Brassica carinata HOM05D003251 ORTHO05D003770 2.5e-19 100.9 432 30.8
arahy.Tifrunner.gnm1.ann1.FIF49B Arachis hypogaea HOM05D003251 ORTHO05D003770 1.3e-18 98.6 429 27.7
AUR62017590 Chenopodium quinoa HOM05D003251 ORTHO05D003770 4.8e-18 96.7 210 38.1
AL4G25750 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 6.3e-18 96.3 452 30.3
AT2G30820 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 6.3e-18 96.3 442 30.5
CAN.G275.14 Capsicum annuum HOM05D003251 ORTHO05D003770 1.8e-17 94.7 259 37.1
arahy.Tifrunner.gnm1.ann1.1PUV9L Arachis hypogaea HOM05D003251 ORTHO05D003770 3.1e-17 94.0 424 27.1
arahy.Tifrunner.gnm1.ann1.XDTP3U Arachis hypogaea HOM05D003251 ORTHO05D003770 5.3e-17 93.2 412 28.2
BcaB01g04080 Brassica carinata HOM05D003251 ORTHO05D003770 9.0e-17 92.4 401 30.7
Carub.0004s1203 Capsella rubella HOM05D003251 ORTHO05D003770 9.0e-17 92.4 449 29.2
Aqoxy4G00020 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 1.5e-16 91.7 296 30.4
arahy.Tifrunner.gnm1.ann1.QM6TI7 Arachis hypogaea HOM05D003251 ORTHO05D003770 3.4e-16 90.5 424 26.9
EL10Ac9g22841 Beta vulgaris HOM05D003251 ORTHO05D003770 3.4e-16 90.5 201 34.8
AUR62015130 Chenopodium quinoa HOM05D003251 ORTHO05D003770 1.3e-15 88.6 198 37.4
HanXRQChr12g0366281 Helianthus annuus HOM05D003251 ORTHO05D003770 3.8e-15 87.0 263 35.4
Hund08247 Selenicereus undatus HOM05D003251 ORTHO05D003770 6.5e-15 86.3 202 36.1
BolC3t14406H Brassica oleracea HOM05D003251 ORTHO05D003770 1.1e-14 85.5 424 28.8
BcaC07g36797 Brassica carinata HOM05D003251 ORTHO05D003770 2.5e-14 84.3 363 30.6
BcaNung05938 Brassica carinata HOM05D003251 ORTHO05D003770 2.5e-14 84.3 395 30.4
C03p20320 Brassica napus HOM05D003251 ORTHO05D003770 3.2e-14 84.0 421 29.2
BraA04t17877Z Brassica rapa HOM05D003251 ORTHO05D003770 3.2e-14 84.0 449 30.5
Sp4g13300 Schrenkiella parvula HOM05D003251 ORTHO05D003770 3.2e-14 84.0 423 29.3
Aa31LG1G7700 Aethionema arabicum HOM05D003251 ORTHO05D003770 5.5e-14 83.2 303 31.7
PSO675G1711 Papaver somniferum HOM05D003251 ORTHO05D003770 9.4e-14 82.4 451 30.4
Psat2g017400 Pisum sativum HOM05D003251 ORTHO05D003770 9.4e-14 82.4 427 27.4
Ah.01g001900 Amaranthus hybridus HOM05D003251 ORTHO05D003770 1.2e-13 82.0 194 37.6
A04p23500 Brassica napus HOM05D003251 ORTHO05D003770 1.2e-13 82.0 398 30.7
Peaxi162Scf00359g00096 Petunia axillaris HOM05D003251 ORTHO05D003770 3.0e-12 77.4 180 39.4
SGA_v2.0_scaffold181G39715 Striga asiatica HOM05D003251 ORTHO05D003770 5.1e-12 76.6 208 34.6
CARHR124290 Cardamine hirsuta HOM05D003251 ORTHO05D003770 1.5e-11 75.1 434 28.6
HPP92_011659 Vanilla planifolia HOM05D003251 ORTHO05D003770 1.5e-11 75.1 410 27.3
Glyma.08G303300 Glycine max HOM05D003251 ORTHO05D003770 3.3e-11 73.9 147 39.5
HPP92_011705 Vanilla planifolia HOM05D003251 ORTHO05D003770 7.4e-11 72.8 404 27.7
BcaC01g06015 Brassica carinata HOM05D003251 ORTHO05D003770 1.8e-09 68.2 261 30.7
BcaB06g28449 Brassica carinata HOM05D003251 ORTHO05D003770 2.0e-08 64.7 397 29.0
MBI18_g37404_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 4.5e-08 63.5 100 45.0
SEGI_31357 Sequoiadendron giganteum HOM05D003251 ORTHO05D003770 7.7e-08 62.8 296 27.4
HPP92_013590 Vanilla planifolia HOM05D003251 ORTHO05D003770 7.7e-08 62.8 408 27.5
Actinidia27823 Actinidia chinensis HOM05D003251 ORTHO05D003770 8.5e-07 59.3 271 29.2


User provided reference genes

Program Settings