Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 0.0e+00 2084.3 1085 100.0
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.1e-201 708.0 1284 39.4
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.1e-196 691.4 1272 39.7
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.0e-157 562.0 1195 37.0
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.8e-143 514.6 1021 38.1
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.7e-128 464.9 1066 36.4
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.3e-125 455.3 1311 31.4
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 4.2e-124 450.3 1212 33.1
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 4.7e-123 446.8 1187 34.0
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 4.3e-116 423.7 1117 32.9
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 9.8e-113 412.5 993 32.9
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.4e-111 408.7 1327 29.8
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.1e-95 354.0 924 33.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 5.6e-92 343.6 1306 28.0
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 5.8e-89 333.6 998 29.4
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 1.0e-85 322.8 1204 27.3
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.4e-81 307.8 1348 26.6
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 2.2e-80 305.1 1315 27.9
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 4.9e-80 303.9 1357 26.5
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 6.0e-78 297.0 1305 28.6
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 7.8e-78 296.6 1106 29.7
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 6.6e-77 293.5 1319 27.1
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 5.3e-74 283.9 1301 28.1
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 9.0e-74 283.1 733 32.1
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.8e-72 277.7 1143 29.5
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.4e-71 275.8 1312 29.2
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.2e-70 272.7 954 28.2
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 3.9e-69 267.7 1307 26.9
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 3.3e-68 264.6 1257 26.2
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 3.3e-68 264.6 1282 28.8
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 1.4e-66 259.2 978 32.6
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 1.4e-66 259.2 1153 30.1
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 9.0e-66 256.5 1144 29.3
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.6e-65 255.0 1281 26.9
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 5.8e-65 253.8 1316 26.5
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.3e-64 252.7 1183 27.6
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 1.7e-64 252.3 1284 26.3
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.9e-64 251.5 1284 26.3
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 3.5e-62 244.6 1050 28.3
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 1.1e-58 233.0 1161 27.2
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 5.3e-58 230.7 1319 26.5
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 1.5e-57 229.2 1148 28.2
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.7e-56 225.7 922 30.5
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.1e-55 223.0 1255 25.5
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.4e-55 222.6 1329 25.9
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 2.1e-54 218.8 1132 27.1
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 2.7e-54 218.4 1227 25.8
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.5e-52 211.8 1147 28.1
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 4.8e-51 207.6 1215 25.7
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.3e-48 199.5 1129 24.9
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 3.2e-47 194.9 1222 25.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 9.3e-47 193.4 706 29.6
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.4e-45 189.5 1183 28.1
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 3.3e-44 184.9 1156 24.7
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 2.6e-41 175.3 854 27.5
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 2.2e-40 172.2 1241 24.8
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 7.2e-39 167.2 322 42.5
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 2.7e-38 165.2 676 26.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 4.7e-38 164.5 1230 25.4
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 5.7e-36 157.5 1251 24.9
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 1.4e-31 142.9 1241 24.3
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 3.3e-28 131.7 1321 23.9
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 2.8e-27 128.6 1051 23.1
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 3.7e-27 128.3 1339 22.9
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 6.3e-27 127.5 1095 26.2
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.6e-25 122.9 1141 24.8
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.2e-23 115.2 1093 23.2
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 1.6e-22 112.8 878 22.7
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.8e-21 109.4 1028 22.7
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 2.3e-21 109.0 605 26.1
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 4.0e-21 108.2 1124 23.4
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 4.0e-21 108.2 1128 23.0
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 5.2e-21 107.8 135 49.6
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.5e-20 106.3 1185 23.8
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 5.7e-20 104.4 671 25.2
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 4.8e-19 101.3 514 27.2
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.4e-18 99.8 1148 23.2
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.1e-18 98.2 975 22.8
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.1e-18 98.2 158 41.8
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 7.0e-18 97.4 1124 23.3
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.0e-16 93.6 946 22.9
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.3e-16 93.2 1141 22.3
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 8.5e-16 90.5 960 22.2
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 8.5e-16 90.5 1146 22.2
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 1.5e-15 89.7 104 51.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.5e-15 89.7 891 22.6
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 2.5e-15 89.0 103 49.5
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 2.1e-14 85.9 87 48.3
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 2.1e-14 85.9 176 38.1
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.1e-14 84.3 184 37.0
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.0e-13 83.6 958 20.6
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.0e-13 83.6 199 32.2
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 1.4e-13 83.2 110 44.5
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 4.4e-12 78.2 747 22.2
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 1.3e-11 76.6 422 23.0
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 4.8e-11 74.7 149 32.9
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 6.3e-11 74.3 663 23.4
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 6.3e-11 74.3 105 41.0
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 1.4e-10 73.2 90 50.0
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 1.4e-10 73.2 90 50.0
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.4e-10 73.2 69 56.5
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 2.4e-10 72.4 95 44.2
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.0e-09 69.3 231 31.6
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 4.5e-09 68.2 982 22.0
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.3e-08 66.6 463 24.2
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.3e-08 65.9 66 47.0
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.1e-07 63.5 56 55.4
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 7.2e-07 60.8 290 24.5
Os05g0518200 Oryza sativa ssp. japonica HOM05D052142 ORTHO05D050110 1.6e-06 59.7 801 21.7
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 3.6e-06 58.5 90 44.4
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.6e-06 58.5 75 45.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 6.1e-06 57.8 50 50.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 6.1e-06 57.8 67 47.8


User provided reference genes

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