Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.8e-215 752.3 375 100.0
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 7.1e-111 404.8 349 63.9
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 1.6e-110 403.7 347 64.3
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 7.8e-110 401.4 349 62.5
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 7.8e-110 401.4 354 62.7
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 1.7e-109 400.2 354 62.1
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 5.1e-109 398.7 340 63.5
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.1e-108 397.5 340 63.2
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.9e-108 396.7 350 62.0
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 7.3e-108 394.8 346 62.7
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.6e-107 393.7 350 62.3
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 1.6e-107 393.7 343 63.0
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 4.7e-107 392.1 331 64.4
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 4.7e-107 392.1 359 60.4
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 6.2e-107 391.7 353 62.6
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 5.2e-106 388.7 333 63.4
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 8.9e-106 387.9 350 60.9
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 5.8e-105 385.2 343 61.5
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 7.6e-105 384.8 337 62.9
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.7e-104 383.6 354 59.0
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 4.9e-104 382.1 349 60.2
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 6.4e-104 381.7 346 60.1
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 6.4e-104 381.7 342 62.0
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 1.9e-103 380.2 359 58.5
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 2.4e-103 379.8 352 58.2
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 4.2e-103 379.0 352 61.1
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 4.2e-103 379.0 327 62.1
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 7.1e-103 378.3 331 60.7
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.7e-102 376.3 345 60.6
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.7e-102 376.3 312 64.1
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 6.0e-102 375.2 347 60.2
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.7e-101 373.6 356 59.6
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 2.3e-101 373.2 328 61.3
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.3e-101 373.2 350 59.1
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 2.3e-101 373.2 328 61.3
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 3.0e-101 372.9 352 59.1
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 3.9e-101 372.5 329 60.2
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 3.9e-101 372.5 342 58.8
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 5.1e-101 372.1 323 60.4
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.5e-100 370.5 359 58.5
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 1.5e-100 370.5 351 60.4
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.9e-100 370.2 347 58.5
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 3.3e-100 369.4 321 61.7
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 5.6e-100 368.6 364 56.9
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 5.6e-100 368.6 332 60.2
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.6e-100 368.6 329 58.7
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.1e-99 366.7 331 59.5
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 2.1e-99 366.7 330 59.1
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.1e-99 366.7 365 56.7
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 4.8e-99 365.5 338 58.3
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 2.4e-98 363.2 349 56.4
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 3.1e-98 362.8 340 58.8
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 4.0e-98 362.5 343 57.7
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 5.3e-98 362.1 341 57.8
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 5.3e-98 362.1 347 56.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.3e-98 362.1 345 55.9
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 6.9e-98 361.7 358 55.3
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 6.9e-98 361.7 338 58.3
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.5e-97 360.5 352 57.1
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 2.6e-97 359.8 351 56.4
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 5.8e-97 358.6 340 57.9
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 1.3e-96 357.5 323 58.5
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 1.3e-96 357.5 347 56.2
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 2.9e-96 356.3 361 57.1
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 4.9e-96 355.5 317 60.9
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 8.4e-96 354.8 340 57.4
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.4e-95 354.0 347 58.2
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 1.9e-95 353.6 326 58.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 5.4e-95 352.1 325 57.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.1e-94 350.1 327 56.9
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 2.1e-94 350.1 328 58.8
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 4.6e-94 349.0 346 56.6
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 4.6e-94 349.0 348 57.8
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 7.8e-94 348.2 350 55.7
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.3e-93 347.4 350 56.6
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.1e-92 344.4 340 57.1
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.3e-92 341.7 350 55.4
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 9.6e-92 341.3 386 50.8
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 1.6e-91 340.5 317 56.2
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 2.8e-91 339.7 343 55.4
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.1e-90 337.8 343 55.4
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.1e-90 336.3 340 54.7
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 3.1e-90 336.3 295 60.7
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 9.0e-90 334.7 344 53.5
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.9e-88 329.7 358 53.1
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.4e-87 327.4 340 54.4
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 7.9e-86 321.6 342 52.6
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 6.7e-85 318.5 342 52.6
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 6.7e-85 318.5 343 54.2
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.1e-84 317.8 348 54.0
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 7.4e-84 315.1 352 53.7
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 4.8e-83 312.4 369 50.4
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 3.1e-82 309.7 346 52.6
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.2e-79 299.7 287 57.5
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 2.0e-73 280.4 351 46.7
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 2.9e-72 276.6 260 55.0
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 7.1e-71 271.9 339 46.9
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 3.7e-67 259.6 346 47.4
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.7e-64 250.8 238 56.7
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.2e-63 246.1 224 58.9
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 4.2e-63 246.1 215 58.6
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 2.0e-60 237.3 190 63.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 5.3e-58 229.2 191 66.5
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 1.4e-55 221.1 123 80.5
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 5.7e-52 209.1 174 64.4
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.2e-51 207.2 354 41.8
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 7.0e-50 202.2 240 48.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 3.5e-49 199.9 328 39.3
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 2.2e-48 197.2 164 65.2
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.2e-46 191.4 151 68.2
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 2.1e-46 190.7 167 62.9
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.0e-45 188.3 164 60.4
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 5.3e-42 176.0 168 59.5
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 9.1e-42 175.3 347 36.0
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.9e-41 172.6 151 62.9
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.9e-39 167.5 334 33.5
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.5e-39 167.2 104 80.8
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.1e-38 164.1 350 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 5.2e-37 159.5 330 33.3
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 1.4e-34 151.4 104 75.0
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 3.8e-32 143.3 169 51.5
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.7e-27 127.9 89 64.0
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.0e-24 118.6 123 56.1
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.1e-22 109.4 113 58.4
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.4e-21 108.2 81 70.4
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 5.7e-20 102.8 84 70.2
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.4e-18 97.4 110 48.2
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 2.4e-18 97.4 109 56.0
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 7.8e-17 92.4 248 30.6
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.5e-15 88.2 339 30.7
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 9.5e-15 85.5 112 48.2
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 1.5e-12 78.2 96 53.1
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 9.5e-07 58.9 137 28.5
Actinidia12444 Actinidia chinensis HOM05D005786 ORTHO05D006946 6.2e-06 56.2 50 56.0


User provided reference genes

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