Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 2.7e-138 495.4 253 100.0
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 4.3e-112 408.3 252 79.8
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 7.4e-112 407.5 252 80.2
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 6.2e-111 404.4 252 80.2
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 1.8e-110 402.9 252 78.2
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 2.4e-110 402.5 251 78.5
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.2e-109 400.2 252 78.6
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 1.1e-107 393.7 253 74.7
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 1.1e-107 393.7 264 74.6
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.4e-107 393.3 253 75.1
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 2.4e-107 392.5 252 76.2
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 5.5e-107 391.3 252 75.8
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 5.5e-107 391.3 254 74.8
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 1.2e-106 390.2 267 75.7
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 6.0e-106 387.9 252 73.0
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 1.3e-105 386.7 252 73.0
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 1.3e-105 386.7 243 77.0
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.3e-105 386.7 243 77.0
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 2.3e-105 386.0 243 76.5
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 5.1e-105 384.8 253 73.9
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 6.7e-105 384.4 283 76.7
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 8.7e-105 384.0 252 73.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 1.1e-104 383.6 235 78.3
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.9e-104 382.9 243 76.1
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.3e-104 382.1 263 70.3
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 7.4e-104 380.9 253 73.9
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 9.6e-104 380.6 253 74.7
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 9.6e-104 380.6 241 78.0
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 1.3e-103 380.2 254 73.6
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 2.1e-103 379.4 254 73.2
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 3.7e-103 378.6 253 73.9
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 4.8e-103 378.3 255 73.3
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 6.2e-103 377.9 253 71.5
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 8.2e-103 377.5 240 76.2
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 8.2e-103 377.5 252 71.8
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 1.4e-102 376.7 251 71.7
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 2.4e-102 375.9 268 70.1
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 3.1e-102 375.6 232 78.4
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 6.9e-102 374.4 253 71.9
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 6.9e-102 374.4 253 73.9
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 6.9e-102 374.4 256 73.4
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 2.0e-101 372.9 245 74.7
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 3.4e-101 372.1 252 71.0
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 5.8e-101 371.3 241 73.0
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 5.8e-101 371.3 227 79.7
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 7.6e-101 370.9 252 74.6
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 1.7e-100 369.8 252 71.0
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 4.9e-100 368.2 255 71.4
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 6.5e-100 367.9 256 72.7
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 8.4e-100 367.5 253 71.9
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 1.1e-99 367.1 254 72.0
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 1.4e-99 366.7 255 70.6
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 1.9e-99 366.3 243 75.3
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 2.5e-99 365.9 256 71.1
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 5.5e-99 364.8 220 81.8
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 7.1e-99 364.4 243 74.9
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 7.1e-99 364.4 255 71.4
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 9.3e-99 364.0 254 70.9
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 1.2e-98 363.6 238 73.1
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.6e-98 363.2 255 71.0
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 1.6e-98 363.2 256 70.3
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.1e-98 362.8 255 71.0
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 7.9e-98 360.9 285 63.5
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.0e-97 360.5 276 66.7
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 8.7e-97 357.5 243 69.1
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.9e-96 356.3 255 70.6
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 1.3e-95 353.6 256 69.9
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 2.1e-95 352.8 256 70.3
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 2.4e-94 349.4 257 68.5
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 3.1e-94 349.0 226 72.6
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 5.3e-94 348.2 252 68.3
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 9.0e-94 347.4 243 68.3
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.0e-93 346.3 223 75.8
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 5.9e-93 344.7 243 67.1
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 7.6e-93 344.4 253 68.0
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 1.0e-92 344.0 243 66.7
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 2.2e-92 342.8 253 68.8
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 2.9e-92 342.4 218 75.2
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 1.4e-91 340.1 243 66.7
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 2.5e-91 339.3 243 66.7
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 3.2e-91 339.0 243 65.8
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 3.2e-91 339.0 245 69.4
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 5.5e-91 338.2 243 65.8
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 9.3e-91 337.4 243 65.8
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 9.3e-91 337.4 243 65.8
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 2.7e-90 335.9 243 65.8
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 7.9e-90 334.3 243 65.0
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 7.9e-90 334.3 215 76.7
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 5.1e-89 331.6 244 66.0
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 6.7e-89 331.3 220 72.3
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 4.8e-87 325.1 252 66.3
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 6.3e-87 324.7 212 75.5
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 4.1e-86 322.0 212 75.0
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 9.1e-86 320.9 243 63.8
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 7.7e-85 317.8 212 74.5
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 2.9e-84 315.8 221 71.0
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 8.5e-84 314.3 242 66.5
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 3.0e-81 305.8 218 67.4
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.1e-78 297.4 238 64.7
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 4.1e-78 295.4 243 58.0
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 2.0e-77 293.1 217 69.6
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 5.9e-77 291.6 239 61.1
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 2.0e-72 276.6 222 65.3
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 1.1e-70 270.8 262 53.4
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 2.5e-67 259.6 229 57.2
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 2.8e-63 246.1 211 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 7.0e-62 241.5 260 52.7
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.0e-57 227.6 209 57.9
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 5.2e-57 225.3 148 75.7
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 3.8e-52 209.1 237 49.8
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 6.6e-28 128.6 221 37.1
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 2.6e-24 116.7 129 55.8
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 2.9e-23 113.2 72 77.8
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 3.3e-19 99.8 233 31.8
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 1.3e-15 87.8 65 63.1
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 1.3e-15 87.8 65 63.1
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 8.7e-12 75.1 232 29.3


User provided reference genes

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