Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 2.0e-83 312.4 158 100.0
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 2.3e-39 166.0 172 57.6
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 8.3e-37 157.5 167 53.9
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 1.4e-36 156.8 171 56.1
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.4e-36 156.8 167 53.9
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.8e-36 156.4 168 56.0
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 4.1e-36 155.2 173 52.0
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 4.1e-36 155.2 167 56.3
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.2e-35 153.7 168 55.4
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.2e-35 153.7 168 55.4
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 5.9e-35 151.4 170 52.4
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 7.7e-35 151.0 172 52.9
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.0e-34 150.6 172 52.9
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 2.3e-34 149.4 163 50.3
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 2.9e-34 149.1 169 53.3
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 2.9e-34 149.1 164 48.8
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 5.0e-34 148.3 155 54.8
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 6.6e-34 147.9 168 56.0
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 1.5e-33 146.7 172 50.6
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 1.5e-33 146.7 172 49.4
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 4.3e-33 145.2 170 50.6
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 5.6e-33 144.8 171 51.5
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 9.5e-33 144.1 170 50.0
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 9.5e-33 144.1 171 50.3
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 9.5e-33 144.1 172 49.4
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 2.1e-32 142.9 169 52.1
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 2.1e-32 142.9 172 48.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 2.8e-32 142.5 165 51.5
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.6e-32 142.1 174 52.9
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.6e-32 142.1 174 52.9
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 3.6e-32 142.1 173 50.9
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 4.7e-32 141.7 166 50.6
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 4.7e-32 141.7 169 47.3
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 4.7e-32 141.7 172 51.2
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 4.7e-32 141.7 167 49.1
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 6.1e-32 141.4 169 52.7
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 6.1e-32 141.4 172 48.8
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.0e-31 140.6 172 48.8
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.4e-31 140.2 167 47.3
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.3e-31 139.4 172 50.0
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 3.0e-31 139.0 170 47.1
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.0e-31 138.7 172 51.2
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.0e-31 138.7 172 50.0
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 6.8e-31 137.9 150 51.3
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 8.9e-31 137.5 171 50.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.2e-30 137.1 162 48.8
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.2e-30 137.1 160 51.2
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.5e-30 136.7 93 72.0
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 1.5e-30 136.7 168 49.4
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.0e-30 136.3 172 47.1
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 2.0e-30 136.3 169 47.9
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.6e-30 136.0 172 50.6
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 3.4e-30 135.6 170 47.6
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 3.4e-30 135.6 172 47.1
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 5.7e-30 134.8 160 47.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 5.7e-30 134.8 164 48.8
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 5.7e-30 134.8 173 45.7
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 5.7e-30 134.8 172 47.7
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 7.5e-30 134.4 172 48.3
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 1.3e-29 133.7 162 47.5
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.3e-29 133.7 165 47.3
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 1.7e-29 133.3 158 48.7
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.2e-29 132.9 162 47.5
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 3.7e-29 132.1 178 46.1
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.9e-29 131.7 166 48.8
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 6.4e-29 131.3 172 49.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.4e-28 130.2 159 49.1
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.4e-28 130.2 166 48.8
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.4e-28 130.2 165 46.1
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.8e-28 129.8 160 49.4
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 2.4e-28 129.4 166 47.0
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 2.4e-28 129.4 161 50.3
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 2.4e-28 129.4 173 45.1
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 4.1e-28 128.6 172 46.5
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 9.2e-28 127.5 162 46.3
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 2.0e-27 126.3 170 45.3
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 2.7e-27 125.9 104 62.5
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 4.6e-27 125.2 182 41.8
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 5.9e-27 124.8 172 45.3
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 5.9e-27 124.8 162 47.5
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.7e-26 123.2 180 45.6
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 8.6e-26 120.9 156 46.2
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.5e-25 120.2 137 51.1
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.5e-25 120.2 164 48.8
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 3.3e-25 119.0 206 38.8
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 5.6e-25 118.2 163 46.6
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 3.6e-24 115.5 152 50.0
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 6.8e-23 111.3 180 39.4
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 8.9e-23 110.9 159 45.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.3e-21 107.1 104 56.7
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.3e-21 107.1 104 56.7
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.1e-20 104.0 92 58.7
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.4e-20 103.6 175 41.1
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.9e-20 103.2 116 48.3
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.9e-20 103.2 172 38.4
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 5.4e-20 101.7 187 39.6
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 1.0e-18 97.4 173 36.4
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.3e-17 92.4 157 36.9
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 5.6e-17 91.7 78 61.5
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.6e-16 89.0 91 56.0
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 8.1e-16 87.8 85 55.3
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 8.1e-16 87.8 85 57.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.3e-13 80.5 172 33.1
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 4.9e-13 78.6 157 36.9
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 8.3e-13 77.8 177 33.3
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.5e-09 66.2 154 36.4
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 2.8e-08 62.8 122 34.4
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.8e-06 55.1 29 79.3


User provided reference genes

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