Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.4e-151 539.7 281 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.3e-101 373.6 281 70.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 9.4e-100 367.5 281 67.3
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.0e-98 362.5 281 67.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.7e-98 361.3 281 66.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.5e-97 360.1 280 66.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-96 356.7 281 65.8
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.8e-96 355.1 281 65.1
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.4e-95 353.6 281 64.4
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.8e-95 353.2 279 65.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 5.3e-95 351.7 284 64.8
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.3e-95 351.7 281 65.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.6e-91 340.1 281 65.1
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.6e-91 339.0 280 60.0
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.3e-90 336.3 280 59.3
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.9e-90 335.5 273 65.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.9e-90 335.5 278 62.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 3.9e-90 335.5 281 62.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.1e-89 334.0 279 63.4
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-89 333.2 281 61.6
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 4.4e-89 332.0 280 59.3
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 5.7e-89 331.6 258 67.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.7e-88 330.1 281 62.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.7e-88 330.1 282 63.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.2e-88 329.7 279 65.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.2e-88 329.7 281 59.1
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.2e-88 329.7 281 61.2
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.2e-88 329.7 283 62.2
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.8e-88 329.3 281 62.6
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.3e-88 328.2 281 63.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.8e-87 326.6 279 63.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.4e-87 326.2 283 59.0
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-87 325.9 281 60.5
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.1e-87 325.5 281 61.6
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 2.6e-86 322.8 280 62.1
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.2e-85 319.7 277 61.7
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.8e-85 318.9 288 57.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 5.0e-85 318.5 277 61.7
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.5e-85 317.8 279 58.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.9e-84 316.6 279 60.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.5e-84 316.2 281 57.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.2e-84 315.5 279 61.3
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.1e-83 313.2 281 58.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.1e-83 313.2 325 54.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.7e-83 312.8 281 58.4
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.7e-83 312.8 279 60.2
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.4e-82 310.5 260 63.1
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.2e-81 307.4 279 60.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.2e-81 307.4 281 56.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.0e-81 306.6 281 56.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.6e-81 306.2 281 56.2
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.6e-81 306.2 280 58.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.6e-81 306.2 260 62.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 3.3e-81 305.8 253 63.6
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.3e-81 305.8 280 56.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 7.5e-81 304.7 282 57.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 7.5e-81 304.7 253 62.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 9.7e-81 304.3 279 56.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.3e-80 303.9 297 58.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.7e-80 302.4 279 56.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.0e-78 296.6 280 56.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.7e-78 296.2 277 54.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 5.9e-78 295.0 280 56.8
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.0e-77 294.3 279 54.5
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-77 293.9 279 53.4
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-77 293.9 279 53.4
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-77 293.9 279 53.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 2.2e-77 293.1 250 58.0
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 3.8e-77 292.4 281 53.4
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 6.5e-77 291.6 272 57.7
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 6.5e-77 291.6 279 57.3
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 8.5e-77 291.2 281 54.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.9e-76 290.0 278 55.0
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.9e-76 290.0 279 53.4
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.2e-76 289.3 281 52.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.2e-76 289.3 281 52.0
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.2e-76 289.3 281 52.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.2e-76 289.3 250 60.4
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 7.2e-76 288.1 280 55.4
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 7.2e-76 288.1 278 54.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-75 287.3 277 52.7
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-75 287.3 280 53.2
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.2e-75 287.3 280 54.6
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.1e-75 286.6 280 53.2
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.1e-75 285.0 280 55.0
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 8.0e-75 284.6 281 51.6
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.0e-74 284.3 279 51.3
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.8e-74 283.5 281 51.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.8e-74 283.5 277 52.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-74 283.5 282 53.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.0e-74 282.7 280 52.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-74 282.7 280 52.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.0e-74 282.7 280 52.5
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.0e-74 282.7 279 51.3
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.0e-74 282.3 282 52.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.0e-74 282.3 282 52.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.2e-74 282.0 280 55.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 6.8e-74 281.6 352 48.6
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.8e-74 281.6 379 46.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 8.8e-74 281.2 282 51.8
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.8e-74 281.2 279 50.9
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.2e-73 280.8 282 51.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-73 280.4 262 59.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.5e-73 280.4 280 53.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.6e-73 279.6 280 51.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.6e-73 279.6 282 53.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.4e-73 279.3 282 52.1
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.4e-73 279.3 282 52.1
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.7e-73 278.5 281 50.9
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 9.8e-73 277.7 282 52.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.7e-72 276.9 262 55.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.2e-72 276.6 279 52.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-72 276.2 281 52.3
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.1e-71 274.2 281 52.7
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.4e-71 273.9 282 53.2
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.8e-71 273.5 246 57.7
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.4e-71 273.1 281 53.7
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 4.1e-71 272.3 277 50.5
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.0e-71 271.6 250 58.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 9.1e-71 271.2 281 52.3
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.2e-70 270.8 279 51.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.6e-70 270.4 282 52.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.9e-70 268.5 281 51.2
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.1e-67 260.0 281 49.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.0e-67 258.1 279 49.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 5.2e-66 255.4 281 50.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 9.8e-65 251.1 285 48.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 4.9e-64 248.8 279 48.4
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.5e-60 237.3 280 45.7
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.9e-60 236.9 280 47.5
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.3e-60 235.0 280 45.4
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.2e-59 234.2 208 61.1
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.1e-59 233.4 282 44.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.6e-59 232.6 284 44.7
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 2.2e-56 223.4 227 53.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 4.3e-52 209.1 296 41.6
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.7e-45 187.2 165 57.6
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.5e-44 184.1 217 46.5
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.3e-44 182.6 176 56.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 6.8e-42 175.3 249 39.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.6e-35 154.1 183 49.2
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.1e-34 151.4 280 34.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 8.9e-34 148.3 121 61.2
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.5e-28 131.0 277 30.0
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.8e-26 124.0 242 30.6
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.0e-26 122.9 127 50.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-25 121.3 127 49.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-25 120.6 116 54.3
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.4e-23 113.6 280 33.2
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-22 110.5 89 64.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.6e-14 82.8 74 47.3
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.0e-14 82.4 77 46.8
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 7.9e-14 82.0 69 49.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 7.9e-14 82.0 69 49.3
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.0e-13 80.1 66 53.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 2.5e-12 77.0 69 46.4
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-10 70.9 49 65.3
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-10 70.9 49 65.3
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-10 70.9 49 65.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.2e-08 63.9 97 45.4
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 5.5e-07 59.3 281 23.8
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 6.0e-06 55.8 98 32.7


User provided reference genes

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