Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 6.0e-121 437.6 227 100.0
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.7e-118 427.9 227 97.4
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.8e-110 402.1 227 89.9
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.4e-109 399.8 227 88.5
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 88.5
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.0e-109 398.3 228 89.5
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 88.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 86.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 88.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.2e-107 392.5 228 88.2
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 88.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 85.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 85.9
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 88.1
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.8
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 86.3
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 85.9
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 87.2
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.2e-106 388.7 226 85.4
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.1e-106 388.3 219 89.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 87.3
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 9.2e-106 387.1 227 85.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.5
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 84.6
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 84.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 85.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 84.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.7e-104 382.9 227 85.9
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.3e-104 382.5 226 86.3
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 84.1
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.6e-104 380.6 229 86.0
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.5e-103 379.0 226 84.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.1
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.3
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.3e-103 378.6 226 84.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 3.3e-103 378.6 218 87.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 7.3e-103 377.5 229 85.2
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 84.6
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 2.8e-102 375.6 219 86.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 3.6e-102 375.2 219 86.3
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 81.5
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.6e-102 375.2 226 83.2
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.7e-102 374.8 226 83.6
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.7e-102 374.8 221 86.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.7e-102 374.8 221 86.0
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 82.8
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 84.1
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 8.1e-102 374.0 228 84.2
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 84.6
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.1e-101 373.6 229 84.7
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 83.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.4e-101 373.2 221 85.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 80.6
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.8e-101 372.9 228 83.8
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 82.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 82.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 228 82.5
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.8e-101 370.9 221 85.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.9e-101 370.5 222 84.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 8.9e-101 370.5 214 86.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.2e-100 370.2 222 83.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.5e-100 369.8 217 85.7
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.0e-100 369.4 233 82.8
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 222 83.8
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.9
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.9
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 81.5
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.4e-100 368.6 217 84.8
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 82.4
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 4.4e-100 368.2 222 82.9
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 80.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 81.9
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.9e-100 367.1 220 85.5
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 82.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 81.9
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.2e-99 365.9 217 84.3
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.9e-99 365.5 218 84.9
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-98 363.6 218 85.3
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.1e-98 363.6 207 87.9
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.1e-98 363.6 227 81.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 80.2
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 3.2e-98 362.1 220 82.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 80.6
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 79.7
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 5.4e-98 361.3 214 83.6
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 7.1e-98 360.9 227 79.3
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 84.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 227 80.6
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 6.0e-97 357.8 215 83.3
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.0e-96 357.1 228 78.9
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 83.2
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.7e-96 356.3 225 81.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.3e-96 355.9 214 80.8
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.1e-96 354.8 214 84.6
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 8.7e-96 354.0 222 79.7
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.9e-95 352.8 214 82.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.5e-95 352.4 227 78.0
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.3e-95 352.1 208 85.6
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 3.3e-95 352.1 214 81.8
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 82.2
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.1e-94 349.4 206 85.0
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-93 347.1 206 82.5
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 260 71.2
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.5e-92 343.2 205 83.9
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 7.6e-92 340.9 213 80.8
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.3e-91 340.1 227 78.0
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.3e-91 340.1 214 78.0
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.2e-91 339.3 229 76.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.2e-91 339.3 202 86.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.6e-86 323.2 228 72.4
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.6e-86 322.0 190 83.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 8.1e-86 320.9 195 82.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.4e-84 315.5 191 81.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-83 313.2 212 73.6
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 4.9e-83 311.6 227 72.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.4e-82 309.3 195 81.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 4.3e-79 298.5 214 72.9
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.0e-75 287.3 183 80.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 9.3e-74 280.8 164 86.0
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 5.1e-72 275.0 227 67.4
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 8.7e-72 274.2 164 82.9
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.5e-71 273.5 229 67.2
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.5e-71 273.5 216 65.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.9e-71 273.1 216 66.2
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.8e-69 266.5 193 71.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.1e-69 265.8 160 81.2
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.4e-68 262.3 196 68.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.8e-68 261.5 197 72.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.2e-67 259.6 150 85.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.7e-65 252.7 153 80.4
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 5.3e-61 238.4 237 54.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 5.9e-60 235.0 153 77.1
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.3e-55 219.2 215 53.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 7.7e-52 208.0 196 61.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 6.5e-51 204.9 131 74.0
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.7e-41 172.9 100 82.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.4e-40 170.6 108 79.6
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.4e-39 165.6 115 73.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 7.5e-31 138.3 92 72.8
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.7e-30 136.0 109 67.0
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.0e-29 131.7 89 74.2
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 3.2e-26 122.9 134 54.5
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.4e-24 117.5 113 61.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 6.6e-19 98.6 63 73.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.3e-18 95.9 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.6e-15 86.7 97 50.5
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.2e-13 79.7 114 43.9
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.1e-13 79.3 60 73.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 7.0e-13 78.6 68 60.3
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.5e-10 70.1 213 27.7
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.4e-08 64.3 63 57.1


User provided reference genes

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