Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 9.9e-264 912.9 466 100.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 3.7e-194 681.8 538 70.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 8.9e-180 634.0 542 65.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 2.0e-179 632.9 523 67.1
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.0e-179 632.9 534 67.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.1e-175 618.2 542 64.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.6e-175 617.5 578 61.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.1e-173 610.9 530 64.5
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.1e-166 590.5 538 62.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 4.3e-166 588.6 540 60.7
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.1e-164 583.9 538 61.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.0e-164 582.0 539 61.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.2e-163 580.5 539 61.2
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.2e-163 580.5 539 61.2
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.3e-162 577.0 535 61.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.7e-162 576.6 552 59.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 2.4e-161 572.8 540 60.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.6e-160 568.5 540 60.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.7e-159 566.6 534 61.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.6e-157 560.1 527 59.8
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.8e-157 559.3 537 59.8
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.8e-157 559.3 534 59.7
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.8e-157 559.3 534 59.7
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-157 558.1 534 59.7
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.1e-157 557.8 508 61.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.1e-156 557.4 535 59.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.8e-156 556.6 540 58.9
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.3e-156 555.1 508 61.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.5e-155 553.5 508 61.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.5e-155 553.5 527 59.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.6e-155 552.7 529 59.5
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.4e-155 552.4 548 57.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.8e-155 551.6 529 58.6
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.9e-155 550.8 534 59.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.3e-154 550.4 527 58.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.2e-154 549.7 537 57.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.8e-154 548.9 535 58.7
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.9e-154 548.5 541 58.8
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.4e-153 546.2 541 57.1
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 9.3e-153 544.3 540 57.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.1e-152 543.1 497 61.6
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.3e-151 540.4 543 58.6
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.6e-151 538.1 525 58.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 9.6e-150 534.3 567 55.7
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.4e-148 529.6 535 57.0
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.0e-147 526.6 528 56.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.5e-147 525.4 523 57.9
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.6e-147 524.6 560 55.7
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.2e-146 523.1 524 56.5
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.2e-144 517.3 516 57.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.2e-144 517.3 561 54.5
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.7e-144 516.2 533 55.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.6e-144 515.4 521 56.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.9e-143 512.3 519 56.1
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.7e-143 511.1 516 56.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 7.4e-142 508.1 523 56.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.8e-141 506.1 534 55.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.7e-141 505.8 525 54.5
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.2e-139 500.7 546 54.6
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.0e-138 497.7 517 54.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.2e-138 496.5 529 56.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.3e-135 487.3 470 58.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.0e-135 486.1 559 52.1
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.1e-134 484.2 445 60.4
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-134 483.8 504 57.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 4.1e-132 475.7 540 53.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 9.0e-132 474.6 523 52.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.2e-131 474.2 344 73.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.8e-125 452.2 543 51.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.4e-124 450.7 536 52.1
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.2e-123 447.6 356 68.3
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.3e-117 427.6 521 49.1
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.7e-115 418.3 456 52.0
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.8e-114 416.0 406 56.7
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 7.4e-110 401.7 499 49.5
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 2.2e-109 400.2 499 49.5
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.0e-100 368.6 323 62.5
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 9.1e-100 368.2 486 43.2
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.1e-92 344.7 405 53.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.7e-90 337.4 500 45.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-87 327.4 315 56.5
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 8.8e-87 325.1 315 55.9
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 8.3e-85 318.5 293 62.5
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 7.7e-83 312.0 356 51.4
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.0e-82 311.6 425 47.5
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.8e-79 300.8 492 42.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 6.2e-64 249.2 467 38.5
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 9.8e-62 241.9 343 43.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.6e-51 208.0 448 36.6
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-51 208.0 381 37.3
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.5e-51 206.8 325 42.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-49 200.3 360 38.3
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.4e-47 194.1 519 33.7
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.1e-47 193.7 360 37.5
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.0e-47 193.4 339 37.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.0e-47 193.4 337 39.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-46 191.8 356 39.3
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.0e-46 191.0 321 37.7
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.4e-46 189.9 338 39.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.6e-46 189.1 326 38.0
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.9e-46 188.7 467 33.6
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-45 188.3 321 38.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.9e-45 187.2 314 41.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 8.4e-45 185.7 354 37.3
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-44 185.3 338 39.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 5.4e-44 183.0 329 34.7
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-43 181.4 340 38.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-42 176.8 457 33.3
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.9e-42 176.8 457 33.7
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.9e-42 176.8 341 39.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.1e-42 176.4 340 37.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-41 175.3 340 37.6
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 7.3e-41 172.6 340 37.4
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.3e-41 172.6 356 36.5
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 9.6e-41 172.2 336 37.8
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-40 171.8 340 37.4
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-40 171.8 354 36.2
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.8e-40 170.6 350 35.4
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 2.8e-40 170.6 189 56.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.6e-40 170.2 470 33.4
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 3.6e-40 170.2 455 33.6
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.8e-40 169.9 330 38.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-40 169.5 315 39.7
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-39 167.9 353 38.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.8e-39 167.9 315 39.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.0e-39 166.8 291 35.7
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.6e-38 164.1 172 54.7
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 3.4e-38 163.7 351 36.2
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-37 161.8 336 36.3
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.3e-37 161.8 309 35.0
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.2e-35 155.2 345 35.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-34 150.6 450 30.9
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.4e-31 141.0 277 36.8
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 6.9e-31 139.4 144 54.2
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.1e-28 132.1 120 60.0
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.5e-28 129.8 113 67.3
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.7e-27 127.5 336 35.1
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 6.7e-26 122.9 175 46.9
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 6.7e-26 122.9 121 57.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.8e-24 117.5 163 47.9
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.8e-24 117.5 197 40.6
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.0e-23 113.6 205 38.0
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.1e-19 101.3 254 35.4
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.9e-19 99.4 159 40.9
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-18 97.4 61 77.0
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 6.7e-18 96.3 60 75.0
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.5e-17 95.1 130 49.2
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.5e-17 95.1 80 65.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-16 90.9 143 44.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 9.0e-15 85.9 109 52.3
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 4.5e-14 83.6 56 75.0
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.8e-13 80.5 83 55.4
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-13 79.3 150 33.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.1e-12 79.0 129 38.8
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-12 78.6 108 42.6
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 3.2e-12 77.4 73 58.9
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 4.2e-12 77.0 89 52.8
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.3e-12 75.9 44 79.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 7.9e-11 72.8 190 33.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.3e-10 71.2 61 57.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-10 70.9 43 67.4
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.9e-10 70.5 81 50.6
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 3.9e-10 70.5 82 43.9
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.1e-09 68.9 60 55.0
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.9e-09 68.2 45 62.2
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 7.4e-09 66.2 145 35.9
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 9.7e-09 65.9 40 67.5
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-08 64.7 75 53.3


User provided reference genes

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