Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.0e-168 594.0 318 100.0
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.2e-157 557.4 318 94.3
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-138 496.1 318 84.9
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.0e-138 496.1 318 84.9
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.0e-135 486.1 318 82.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.8e-135 484.2 318 81.8
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 5.0e-134 481.5 256 99.2
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.9e-133 479.6 318 79.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-130 470.3 318 78.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.8e-130 468.0 318 78.9
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 78.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.9e-129 465.7 319 78.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.3e-129 464.2 320 78.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 77.7
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 77.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 78.0
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 77.4
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 76.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 77.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.7e-127 459.1 316 77.8
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 78.0
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 6.0e-127 458.0 318 78.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 77.4
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 76.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 3.0e-126 455.7 362 69.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 77.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 5.0e-126 454.9 318 75.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 5.0e-126 454.9 318 78.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 6.6e-126 454.5 318 76.4
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.1e-125 453.8 319 75.9
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 77.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.9e-125 453.0 318 76.1
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.5e-125 452.6 318 76.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.3e-125 451.8 318 77.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 7.3e-125 451.1 318 76.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 76.1
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.8e-124 449.1 318 76.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.7e-124 448.4 318 75.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 4.7e-124 448.4 318 77.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.7e-124 448.4 318 76.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 76.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.4e-123 446.8 318 75.5
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.4e-123 446.8 318 76.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 75.8
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 76.1
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 5.2e-123 444.9 242 96.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 8.9e-123 444.1 318 76.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.4e-122 441.8 318 76.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.4e-122 441.8 318 75.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 5.8e-122 441.4 318 75.5
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 7.5e-122 441.0 318 75.2
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.2e-121 439.5 318 74.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.2e-121 439.5 318 75.2
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 74.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 75.5
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 3.7e-121 438.7 318 74.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 4.9e-121 438.3 318 75.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 6.4e-121 438.0 319 74.6
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 8.3e-121 437.6 318 73.9
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 74.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.2e-120 435.6 318 73.3
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.2e-120 435.6 318 74.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 73.6
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 7.1e-120 434.5 318 73.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.5e-119 432.2 316 73.1
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 4.6e-119 431.8 318 73.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 7.8e-119 431.0 315 73.3
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 7.8e-119 431.0 318 74.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 5.1e-118 428.3 318 73.0
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 73.3
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.8e-116 422.5 318 71.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.8e-116 422.5 318 72.3
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.6e-116 422.2 318 72.3
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.6e-116 422.2 318 71.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.4e-115 420.2 319 71.5
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.0e-115 418.7 318 71.1
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.0e-115 418.7 318 72.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 8.9e-115 417.5 318 71.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-114 417.2 318 70.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.0e-114 416.4 318 70.4
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.0e-114 416.4 318 72.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-114 416.0 353 66.0
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.4e-114 415.2 318 71.7
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.9e-113 411.8 318 69.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.1e-112 410.6 319 70.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.2e-112 409.1 320 70.3
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.1e-112 408.7 318 71.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 9.2e-112 407.5 320 68.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 9.2e-112 407.5 318 69.5
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 3.5e-111 405.6 318 70.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.0e-111 404.8 281 76.5
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.1e-110 401.7 318 69.8
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.7e-110 401.0 319 71.5
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.1e-109 400.6 286 76.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.5e-109 400.2 299 73.2
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.6e-108 395.6 318 69.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.6e-108 395.6 321 68.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.6e-108 395.6 318 68.2
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 3.1e-107 392.5 302 70.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.1e-107 392.5 317 67.8
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 5.2e-107 391.7 302 70.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.2e-107 391.7 280 75.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 5.2e-107 391.7 317 67.8
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.5e-106 390.2 302 69.9
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 5.8e-106 388.3 305 69.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-104 383.6 287 73.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 5.4e-104 381.7 270 75.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.7e-103 379.4 319 67.1
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.5e-101 372.9 294 68.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.3e-101 372.5 294 68.4
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.0e-99 365.5 270 73.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.9e-99 364.8 264 74.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.6e-95 352.1 318 61.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 7.9e-95 351.3 318 65.7
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.0e-94 349.4 318 64.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.0e-94 349.4 318 61.9
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-91 339.7 318 61.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.2e-90 337.4 270 66.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 9.9e-90 334.3 317 62.5
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.4e-89 331.6 230 77.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-83 314.3 318 56.9
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-77 294.3 228 69.7
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-77 293.5 391 50.4
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.6e-71 273.9 320 50.3
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 8.8e-70 268.1 748 31.8
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 5.3e-67 258.8 325 48.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 7.7e-66 255.0 321 46.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.6e-61 240.0 181 76.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.3e-57 227.6 299 46.5
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.8e-52 209.9 190 63.7
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 9.1e-51 204.9 150 78.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.7e-47 193.4 275 49.8
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.0e-46 189.5 121 87.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.7e-46 188.7 159 71.1
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.2e-40 169.5 120 80.8
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.8e-38 162.2 154 63.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.4e-37 159.8 121 65.3
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 4.8e-36 156.0 316 35.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.1e-35 154.8 252 42.1
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 9.1e-35 151.8 275 42.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.2e-29 134.8 110 66.4
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.6e-29 133.7 91 73.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.3e-28 129.0 158 56.3
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.2e-26 124.8 136 60.3
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.8e-26 122.1 111 65.8
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.7e-25 120.9 91 69.2
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.4e-22 111.3 89 64.0
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.8e-22 110.9 99 60.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-17 94.7 58 81.0
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.3e-14 84.0 57 77.2
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 8.9e-14 82.0 396 25.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.6e-10 69.7 92 48.9
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.9e-09 66.6 158 34.2
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.4e-06 58.2 90 41.1


User provided reference genes

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