Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.0e-189 665.6 344 100.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.4e-182 641.0 344 97.1
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.0e-129 465.3 373 65.4
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.0e-129 465.3 373 65.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 7.1e-126 454.5 379 64.1
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.1e-125 453.0 379 63.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.3e-124 450.3 374 63.9
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.8e-124 449.9 378 63.5
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 5.1e-124 448.4 379 63.1
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 6.7e-124 448.0 374 63.1
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 8.7e-124 447.6 379 61.7
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.9e-123 446.4 375 64.0
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.9e-123 446.4 379 63.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.5e-123 446.0 378 62.4
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.5e-123 446.0 374 63.4
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.3e-123 445.7 379 62.5
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 4.3e-123 445.3 379 60.9
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 5.7e-123 444.9 378 63.0
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 7.4e-123 444.5 379 63.1
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 9.6e-123 444.1 375 63.7
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.6e-123 444.1 374 63.6
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.8e-122 442.6 378 62.4
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 2.8e-122 442.6 378 62.4
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.7e-122 442.2 379 62.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 6.2e-122 441.4 373 63.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.8e-121 439.9 378 61.1
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.8e-121 439.9 375 62.4
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 4.1e-121 438.7 376 62.5
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 9.0e-121 437.6 379 62.0
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.2e-120 437.2 375 62.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 2.6e-120 436.0 379 61.2
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.4e-120 435.6 380 60.0
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.8e-120 434.9 377 61.0
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.7e-119 433.3 375 62.1
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.7e-119 433.3 380 61.8
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.2e-119 433.0 379 62.0
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 3.8e-119 432.2 372 61.6
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.1e-118 430.6 380 61.1
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.4e-118 430.3 377 60.5
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.9e-118 429.9 372 61.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 3.2e-118 429.1 375 61.3
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 3.2e-118 429.1 372 62.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.2e-118 428.7 379 61.2
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 7.2e-118 427.9 376 59.3
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.6e-117 426.8 375 61.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.6e-117 426.8 375 61.6
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.5e-117 425.6 377 61.0
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.5e-117 425.6 375 60.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 4.6e-117 425.2 372 61.8
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 4.6e-117 425.2 369 61.2
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.8e-116 423.3 375 60.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.8e-116 423.3 375 60.5
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 6.7e-116 421.4 369 61.0
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 6.7e-116 421.4 375 58.9
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.5e-115 420.2 369 60.4
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 9.7e-115 417.5 375 60.3
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.6e-114 416.8 404 55.9
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.2e-114 416.4 375 60.8
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.7e-114 415.6 375 60.0
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 8.2e-114 414.5 373 60.1
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 8.2e-114 414.5 375 59.7
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.3e-113 411.8 331 64.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.2e-112 410.6 378 59.8
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.5e-112 410.2 346 62.1
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.5e-112 410.2 378 59.5
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 5.0e-111 405.2 378 58.2
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 6.5e-111 404.8 375 57.9
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 8.5e-111 404.4 405 55.3
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 8.5e-111 404.4 375 59.2
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 1.9e-110 403.3 378 58.2
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 3.2e-110 402.5 379 57.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.2e-109 400.6 373 57.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-109 400.6 374 59.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.2e-109 400.6 376 59.3
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.7e-109 399.4 376 58.0
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 3.9e-108 395.6 478 49.0
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 5.1e-108 395.2 373 57.4
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 8.8e-108 394.4 376 55.1
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.5e-107 393.7 373 57.6
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.3e-106 390.6 377 56.0
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.2e-106 387.9 371 58.5
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.3e-103 380.6 378 56.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.8e-103 379.0 376 55.3
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 4.2e-102 375.6 342 58.2
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 2.1e-101 373.2 374 56.1
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.0e-95 354.4 378 52.4
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 4.7e-93 345.5 365 54.2
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 8.0e-93 344.7 378 50.5
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.2e-92 342.0 371 52.8
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 6.7e-92 341.7 375 49.6
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 6.3e-82 308.5 218 68.8
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.9e-80 302.0 217 69.6
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.9e-80 302.0 218 67.0
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.2e-79 300.1 218 67.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.9e-79 299.7 370 44.9
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 6.3e-74 282.0 208 67.8
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 7.0e-73 278.5 376 42.6
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 7.7e-72 275.0 392 42.1
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.1e-69 266.9 370 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 5.2e-68 262.3 374 40.6
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 5.7e-67 258.8 301 51.2
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.9e-66 255.8 359 41.8
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.1e-65 252.7 372 43.8
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.0e-63 245.7 369 40.9
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 7.8e-56 221.9 366 35.5
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 7.8e-56 221.9 374 36.1
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.1e-54 218.0 215 54.9
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.6e-48 197.6 373 34.0
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.5e-40 169.9 168 58.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.3e-33 145.2 116 67.2
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.1e-30 138.3 85 77.6
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 4.3e-30 136.3 116 61.2
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.3e-28 129.4 110 61.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.4e-27 126.7 127 52.0
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 9.9e-27 125.2 160 47.5
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.7e-26 124.4 159 47.8
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.2e-24 118.2 142 47.9
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 8.7e-23 112.1 416 28.1
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-22 111.7 105 58.1
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.8e-21 107.1 105 57.1
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.2e-21 105.9 105 56.2
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.8e-20 104.4 103 51.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.8e-20 104.4 133 48.9
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-19 101.7 171 38.6
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 6.4e-18 95.9 115 45.2
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 6.4e-18 95.9 115 45.2
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.4e-17 94.0 378 26.2
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.8e-15 87.8 83 56.6
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 3.0e-15 87.0 51 76.5
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 4.9e-10 69.7 94 43.6
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 3.5e-08 63.5 36 75.0


User provided reference genes

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