Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.8e-107 392.1 221 100.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.7e-91 338.6 225 85.8
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.4e-90 336.7 224 85.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.4e-90 335.9 224 85.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.1e-90 335.1 226 85.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.3e-90 334.7 224 85.3
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.3e-90 334.7 224 85.3
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.9e-90 334.3 224 84.8
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-89 333.6 224 84.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.6e-89 332.4 224 83.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.6e-89 332.4 224 85.3
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.4e-89 332.0 224 84.8
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 5.9e-89 331.3 224 84.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.0e-88 330.5 224 84.4
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.3e-88 330.1 224 83.9
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.7e-88 329.7 224 84.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.7e-88 329.7 224 84.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.2e-88 329.3 224 83.0
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.9e-88 328.9 224 83.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 2.9e-88 328.9 224 83.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 3.8e-88 328.6 224 84.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.8e-88 328.6 224 83.9
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.8e-88 328.6 224 83.9
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.0e-88 328.2 224 83.9
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.0e-88 328.2 224 83.5
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.0e-88 328.2 224 83.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 5.0e-88 328.2 222 84.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 6.5e-88 327.8 224 83.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 6.5e-88 327.8 224 84.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.4e-88 327.4 224 82.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.4e-88 327.4 222 84.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 8.4e-88 327.4 228 83.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.4e-87 326.6 224 83.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-87 325.9 224 84.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.5e-87 325.9 224 82.6
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.5e-87 325.9 224 83.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.5e-87 325.9 222 85.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 3.2e-87 325.5 224 82.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 4.2e-87 325.1 224 82.1
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 5.5e-87 324.7 224 82.1
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.5e-87 324.7 224 82.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 5.5e-87 324.7 224 83.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.2e-86 323.6 230 81.7
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-86 323.6 224 83.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.6e-86 323.2 224 83.5
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.6e-86 323.2 224 83.5
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-86 322.8 224 84.8
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.7e-86 322.4 224 83.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 4.6e-86 321.6 224 83.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.1e-86 321.2 224 83.5
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.0e-85 320.5 224 83.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.0e-85 320.5 224 82.6
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.8e-85 319.7 224 83.9
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.8e-85 319.7 224 81.2
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 81.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 81.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 81.2
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 82.6
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 80.8
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.0e-85 318.9 224 81.2
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.0e-85 318.9 242 76.9
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.9e-85 318.5 222 82.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.1e-85 318.2 222 81.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 6.7e-85 317.8 224 79.9
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.1e-84 317.0 224 81.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.1e-84 317.0 224 83.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.6e-83 313.2 224 79.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.8e-83 312.4 225 80.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.8e-83 312.4 222 81.1
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.8e-83 312.4 232 78.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.8e-83 312.4 228 80.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 4.8e-83 311.6 223 81.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 8.2e-83 310.8 224 78.6
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.4e-82 310.1 224 82.6
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.4e-82 309.3 246 73.6
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.1e-82 308.9 224 79.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 4.1e-82 308.5 224 79.9
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 4.1e-82 308.5 218 82.6
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 5.3e-82 308.1 232 78.4
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.9e-82 307.8 265 70.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.2e-81 307.0 216 83.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.2e-81 307.0 216 82.9
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.5e-81 305.1 223 77.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.9e-81 304.7 224 79.5
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 5.9e-81 304.7 225 79.6
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 5.9e-81 304.7 225 79.6
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 7.7e-81 304.3 223 77.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.3e-80 303.5 226 79.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.3e-80 303.5 224 77.7
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.7e-80 303.1 224 79.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.2e-80 302.8 268 69.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 5.0e-80 301.6 224 75.9
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-79 299.7 269 68.0
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 5.5e-79 298.1 224 73.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 9.4e-79 297.4 224 78.1
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 6.1e-78 294.7 225 77.3
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.0e-77 293.9 232 69.0
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-77 293.1 265 68.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-77 292.7 224 76.3
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.8e-77 290.8 224 75.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.0e-76 289.7 222 76.1
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.3e-75 287.0 267 61.8
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.7e-75 285.4 307 55.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.4e-74 282.7 246 64.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 5.3e-74 281.6 224 74.1
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 9.1e-74 280.8 226 74.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.9e-73 278.1 224 67.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.0e-69 267.3 224 73.7
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.0e-69 267.3 224 73.7
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-69 266.2 211 74.4
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.2e-69 265.0 222 64.9
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.6e-68 262.7 224 71.4
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.4e-68 261.9 185 82.7
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.1e-66 257.3 224 67.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.4e-66 256.9 223 66.8
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.5e-63 246.1 227 65.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.2e-63 245.7 185 79.5
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-62 243.0 169 82.2
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-62 243.0 169 82.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.4e-58 229.6 232 62.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.9e-57 224.9 185 73.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 7.2e-55 218.0 229 56.8
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 6.1e-54 214.9 219 56.6
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.5e-49 198.7 237 49.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 5.0e-48 195.3 122 82.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.6e-44 183.0 143 78.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.4e-44 182.6 116 81.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.2e-41 174.1 91 95.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.3e-40 169.9 166 67.5
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-37 161.0 239 45.2
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-37 160.2 90 88.9
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.4e-36 155.6 290 42.1
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 7.5e-36 154.8 84 92.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 9.8e-36 154.5 81 95.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.7e-35 152.5 119 70.6
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.8e-28 127.9 141 58.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 5.4e-26 122.1 92 69.6
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 8.6e-24 114.8 64 85.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.8e-22 109.8 58 93.1
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.8e-22 109.8 58 93.1
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-19 100.9 149 45.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-19 99.0 123 52.8
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-18 96.7 71 87.3
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.4e-18 96.7 140 47.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.2e-17 94.4 56 80.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.5e-17 92.8 139 41.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.6e-17 92.4 173 37.0
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.8e-17 91.7 71 80.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.9e-15 87.0 149 41.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.3e-15 86.3 149 39.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 4.0e-13 79.3 46 80.4
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.2e-13 79.0 153 33.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-13 78.6 46 84.8
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.0e-12 77.0 218 35.3
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.4e-12 75.9 39 94.9
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 4.9e-11 72.4 42 81.0
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.4e-11 72.0 147 40.1
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.1e-10 69.3 125 40.0
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.4e-10 68.9 75 53.3
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.3e-08 63.5 136 41.9
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.9e-07 60.5 40 72.5
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.5e-07 60.1 128 43.0


User provided reference genes

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