Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 4.0e-125 451.4 229 100.0
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.8e-115 418.3 209 100.0
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 8.2e-102 374.0 227 82.4
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.2e-102 374.0 227 81.9
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-101 373.6 227 80.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.4e-101 373.2 227 80.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.0e-100 369.4 227 80.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.4e-100 368.6 227 80.6
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 7.6e-100 367.5 227 80.6
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.7e-99 366.3 223 78.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.8e-99 365.2 227 79.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.8e-99 365.2 227 78.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.9e-99 364.8 227 79.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 4.9e-99 364.8 231 78.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 6.5e-99 364.4 227 78.9
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 8.4e-99 364.0 223 79.4
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.1e-98 363.6 227 79.7
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-98 362.8 227 79.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 4.2e-98 361.7 227 78.0
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 9.3e-98 360.5 223 77.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.2e-97 360.1 227 77.5
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 79.3
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 79.3
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-97 359.4 227 78.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.1e-97 359.4 227 78.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 2.7e-97 359.0 223 76.7
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 4.6e-97 358.2 227 78.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.0e-97 357.8 227 78.9
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.0e-97 357.8 227 78.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.0e-96 357.1 227 78.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.3e-96 356.7 227 77.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.8e-96 356.3 227 78.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.8e-96 356.3 224 76.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.3e-96 355.9 223 78.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.3e-96 355.9 227 78.9
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.9e-96 355.1 227 78.9
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 5.1e-96 354.8 227 76.7
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 5.1e-96 354.8 222 78.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 6.7e-96 354.4 223 78.9
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.7e-96 354.4 227 77.1
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-96 354.4 227 78.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.7e-96 354.0 227 78.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-95 353.2 224 76.3
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.9e-95 352.8 224 77.7
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 5.7e-95 351.3 227 74.0
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 7.4e-95 350.9 223 77.6
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 3.7e-94 348.6 227 73.6
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 6.3e-94 347.8 228 74.1
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 8.2e-94 347.4 227 74.9
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 8.2e-94 347.4 224 75.9
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-93 347.1 224 76.8
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.4e-93 345.9 227 73.6
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 4.1e-93 345.1 227 75.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 4.1e-93 345.1 224 76.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 6.9e-93 344.4 224 75.0
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.0e-93 344.0 227 75.3
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 76.7
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-92 343.6 224 76.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.6e-92 342.4 230 76.5
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 3.4e-92 342.0 224 76.3
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 72.7
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 74.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 74.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.5e-92 341.7 224 75.0
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 5.9e-92 341.3 227 74.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 5.9e-92 341.3 227 74.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 72.2
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 74.9
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-91 339.0 224 74.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 75.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.5e-91 337.8 227 74.9
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.1e-90 337.0 225 72.9
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-90 337.0 230 74.8
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.9e-90 336.3 223 73.5
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.5e-90 335.9 225 72.9
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.2e-90 335.1 218 77.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 5.5e-90 334.7 227 73.1
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 7.2e-90 334.3 224 74.1
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.2e-90 334.3 227 73.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 9.4e-90 334.0 223 75.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 3.6e-89 332.0 224 71.0
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 3.6e-89 332.0 227 70.0
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.6e-89 332.0 225 71.6
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.0e-88 330.5 263 64.3
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.9e-88 328.6 227 71.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.1e-88 328.2 224 70.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.7e-88 327.8 223 72.6
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 71.8
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.8e-88 327.4 227 71.8
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 8.8e-88 327.4 223 74.4
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-87 327.0 224 69.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.0e-87 326.2 227 71.8
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 71.9
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-87 325.9 202 80.7
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 7.4e-87 324.3 228 70.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-86 323.6 224 68.8
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.3e-86 323.6 224 71.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 4.8e-86 321.6 224 68.8
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.8e-86 321.6 222 68.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 6.3e-86 321.2 224 68.3
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 6.3e-86 321.2 224 68.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 8.2e-86 320.9 224 68.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.8e-85 319.7 224 69.2
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-85 319.7 224 68.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.4e-85 319.3 223 68.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.1e-85 318.9 224 67.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.1e-85 318.9 224 67.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 5.3e-85 318.2 225 69.8
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.3e-85 318.2 224 71.4
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.5e-84 315.1 227 70.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 7.7e-84 314.3 227 66.5
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-82 309.7 224 66.1
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.6e-81 306.6 188 80.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.7e-81 305.8 195 79.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.1e-81 304.7 312 53.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-80 303.5 204 71.6
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.4e-79 298.5 230 67.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 7.4e-79 297.7 227 68.7
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.3e-78 297.0 221 67.0
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.7e-78 295.4 224 64.7
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.1e-77 293.9 208 68.8
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 4.1e-77 292.0 227 61.7
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 4.5e-76 288.5 226 62.8
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-75 286.2 202 71.3
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.8e-75 285.4 228 63.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.5e-74 282.7 196 69.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 6.3e-70 268.1 178 75.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.2e-66 254.6 234 57.3
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-65 253.8 152 81.6
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.6e-63 246.1 182 69.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.3e-62 243.8 224 54.9
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.2e-62 243.0 133 87.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 3.1e-61 239.2 219 54.3
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.7e-60 236.1 249 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.2e-59 233.0 220 52.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-58 230.7 144 79.2
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.8e-56 221.1 124 87.1
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 6.3e-54 214.9 226 51.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 3.8e-51 205.7 144 70.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 3.0e-48 196.1 172 61.0
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.7e-44 183.0 134 67.2
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 4.5e-44 182.2 142 67.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 7.8e-44 181.4 115 75.7
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-43 179.9 138 61.6
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 3.9e-43 179.1 134 64.9
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-42 176.0 147 61.9
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.5e-39 167.2 221 44.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 8.3e-38 161.4 126 65.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 3.2e-37 159.5 142 54.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.1e-37 159.1 183 45.4
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.7e-36 156.4 85 87.1
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.1e-34 151.0 197 45.2
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 4.3e-34 149.1 97 77.3
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.1e-32 144.4 109 67.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-31 141.0 133 55.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.0e-31 140.2 88 79.5
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 5.8e-31 138.7 102 68.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.4e-29 134.0 91 74.7
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-29 134.0 85 74.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.2e-29 132.9 107 60.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 9.2e-29 131.3 85 76.5
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 7.8e-28 128.3 82 76.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-27 127.1 79 81.0
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.0e-27 126.3 94 67.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 3.3e-26 122.9 95 66.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 7.3e-26 121.7 77 77.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.7e-25 119.0 85 69.4
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-23 114.4 85 68.2
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.5e-23 114.0 75 76.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-21 106.7 127 50.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 5.4e-21 105.5 98 57.1
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-18 97.1 84 60.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 6.2e-17 92.0 51 86.3
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.4e-16 90.9 173 32.9
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 3.1e-16 89.7 61 72.1
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 8.9e-16 88.2 107 47.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 6.4e-14 82.0 220 30.0
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.9e-13 80.5 64 59.4
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 6.0e-12 75.5 60 61.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.0e-11 74.7 49 69.4
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.7e-11 73.9 67 55.2
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.1e-10 71.2 185 29.2


User provided reference genes

Program Settings