Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.5e-229 799.3 446 100.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 9.2e-158 560.8 398 77.9
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 5.0e-156 555.1 398 76.6
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.4e-150 536.2 399 73.7
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.6e-149 533.5 398 72.4
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-147 527.3 398 73.1
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.2e-146 523.9 397 73.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.2e-146 523.9 397 73.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.0e-144 516.5 395 72.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 9.8e-144 514.2 395 70.9
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.3e-140 503.8 398 69.8
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 3.9e-140 502.3 394 68.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.1e-137 492.7 395 67.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 5.8e-136 488.4 435 63.4
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 9.9e-136 487.6 398 66.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.9e-135 485.3 399 66.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.4e-134 483.0 412 63.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.2e-134 482.6 370 70.5
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.7e-133 479.6 405 63.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.5e-133 479.2 393 65.9
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 6.0e-133 478.4 403 67.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 7.8e-133 478.0 399 66.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.3e-132 477.2 396 66.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.9e-132 475.7 405 65.2
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.9e-132 475.7 401 65.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.6e-132 474.9 398 66.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.6e-132 474.9 396 65.9
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.1e-131 474.2 402 65.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.3e-131 472.6 397 66.2
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 4.3e-131 472.2 400 67.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.6e-130 470.3 399 64.2
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.6e-130 469.2 400 65.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.1e-129 467.6 398 66.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 8.9e-129 464.5 400 65.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 8.9e-129 464.5 401 66.1
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 3.4e-128 462.6 398 64.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 5.8e-128 461.8 398 66.3
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.9e-128 461.1 403 62.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.3e-127 460.7 391 64.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.3e-127 460.7 398 65.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.3e-127 460.7 397 65.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.2e-127 459.9 431 60.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 3.8e-127 459.1 391 64.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 6.4e-127 458.4 413 63.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.4e-127 458.0 398 62.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 8.4e-127 458.0 392 65.1
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-126 454.9 398 63.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 9.2e-126 454.5 406 63.3
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 9.2e-126 454.5 398 64.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.7e-125 453.0 431 58.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.5e-125 452.6 392 64.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.5e-125 452.6 392 64.8
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.6e-125 452.2 398 63.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.0e-125 451.8 392 64.5
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 7.8e-125 451.4 398 62.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.3e-124 449.9 398 63.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-124 449.5 392 64.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.1e-124 448.7 398 62.8
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.5e-123 446.4 412 60.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.3e-123 445.7 391 63.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.6e-122 443.7 426 60.6
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.6e-122 443.7 391 63.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.4e-121 440.7 411 61.6
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.4e-121 439.9 406 61.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.1e-121 439.5 399 61.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 5.3e-121 438.7 397 59.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.9e-121 438.3 392 63.8
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.9e-121 438.3 410 62.0
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.0e-120 436.8 397 59.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 3.4e-120 436.0 406 60.3
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 4.4e-120 435.6 397 59.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.4e-120 435.6 399 60.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-119 434.1 396 61.4
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-119 433.7 397 59.7
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.7e-119 433.7 398 58.5
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.2e-119 433.3 398 60.8
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.9e-119 433.0 397 58.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.4e-119 431.8 397 59.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.9e-118 430.3 399 58.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-118 430.3 399 58.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.9e-118 430.3 399 58.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.2e-118 429.5 392 61.2
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 4.2e-118 429.1 392 61.0
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-118 428.3 397 61.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 9.3e-118 427.9 397 61.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.7e-117 426.4 393 61.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.5e-117 426.0 398 57.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.5e-117 426.0 399 60.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.6e-117 425.6 397 58.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 7.8e-117 424.9 398 58.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.7e-116 423.7 392 60.2
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 8.7e-116 421.4 396 58.3
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 3.6e-114 416.0 396 58.1
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 6.2e-114 415.2 394 58.6
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.1e-113 414.5 417 59.2
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.1e-113 414.5 398 57.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.8e-113 413.7 423 56.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.8e-108 397.1 399 58.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.7e-106 389.4 323 65.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.3e-103 380.9 295 68.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.1e-102 377.9 281 69.4
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.3e-100 370.2 395 54.2
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.4e-97 360.9 399 53.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.7e-95 354.0 400 49.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 6.3e-90 335.5 397 48.1
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.1e-89 332.8 282 61.7
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.2e-88 331.3 378 49.5
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.7e-87 327.4 399 51.6
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.2e-86 323.2 404 48.3
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.1e-84 315.8 270 61.9
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.3e-81 305.8 252 65.1
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.2e-80 304.7 397 44.8
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.6e-77 293.1 406 43.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.4e-76 291.2 395 42.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.4e-76 291.2 406 42.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.1e-70 271.6 395 43.3
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-65 255.0 214 66.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 9.1e-65 251.9 378 42.6
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 9.8e-59 231.9 407 39.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.1e-57 226.5 202 61.4
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 8.5e-55 218.8 189 65.6
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-49 201.8 171 60.8
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 7.7e-48 195.7 208 52.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-46 191.4 236 52.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.2e-45 188.3 147 68.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 8.9e-44 182.2 286 41.6
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 8.6e-39 165.6 178 51.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 3.0e-31 140.6 186 45.7
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-28 131.7 118 65.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-28 131.3 170 47.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-28 131.3 170 47.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.0e-24 116.3 127 52.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.5e-19 101.7 75 68.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 4.4e-11 73.6 58 60.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-10 71.6 67 58.2
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 8.4e-10 69.3 52 61.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.4e-10 69.3 74 55.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 8.4e-10 69.3 74 55.4
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 4.6e-08 63.5 384 23.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 8.7e-07 59.3 82 46.3
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.5e-06 57.8 72 50.0


User provided reference genes

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