Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 4.1e-246 854.4 460 100.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 4.6e-120 435.6 460 58.3
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.7e-111 407.1 457 56.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 7.1e-105 385.2 410 57.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.6e-99 366.7 459 51.9
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.6e-99 366.7 454 52.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 4.5e-99 365.9 460 51.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 5.8e-99 365.5 460 51.5
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.7e-98 364.0 457 52.5
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.0e-95 354.8 470 51.9
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.6e-94 349.0 457 49.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.3e-93 347.8 338 61.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.5e-91 340.9 463 46.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 4.5e-91 339.3 466 49.1
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 4.5e-91 339.3 457 47.7
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.8e-90 336.3 443 49.0
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 8.4e-90 335.1 460 48.3
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 9.3e-89 331.6 462 49.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 9.3e-89 331.6 459 47.3
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.7e-88 330.1 459 47.3
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 6.0e-88 328.9 464 48.3
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.3e-87 327.0 463 49.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.1e-86 324.7 461 47.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.5e-86 324.3 444 48.0
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.3e-86 323.2 453 48.1
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 4.3e-86 322.8 459 47.9
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 4.3e-86 322.8 444 47.7
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.6e-85 320.9 469 46.1
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.1e-85 320.5 455 47.9
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.1e-85 320.5 495 45.5
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 6.3e-85 318.9 455 47.9
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 6.3e-85 318.9 412 49.3
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 8.2e-85 318.5 463 46.0
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.4e-84 317.8 491 47.3
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 5.3e-84 315.8 460 45.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 9.0e-84 315.1 458 47.8
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.2e-83 314.7 476 46.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 5.0e-82 309.3 455 45.5
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-81 308.1 372 52.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.9e-81 307.4 457 45.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 3.2e-81 306.6 495 43.6
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.6e-80 304.3 496 44.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 8.7e-79 298.5 459 44.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.5e-78 297.0 458 46.3
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.2e-77 293.9 458 45.4
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.8e-77 293.5 459 42.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.4e-76 290.4 455 45.3
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.4e-75 286.6 473 42.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.9e-75 285.8 479 43.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 5.9e-75 285.8 460 43.9
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 5.9e-75 285.8 460 43.9
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 7.7e-75 285.4 458 44.5
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.3e-74 284.6 461 43.2
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.5e-73 280.4 458 42.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 4.2e-73 279.6 456 45.6
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 5.5e-73 279.3 459 43.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.2e-72 278.1 428 46.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.2e-72 278.1 454 44.3
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.9e-72 275.4 460 41.1
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.9e-71 273.1 464 44.2
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.9e-71 273.1 412 47.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 8.8e-71 271.9 431 43.6
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 2.0e-70 270.8 417 47.0
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.6e-70 270.4 462 43.3
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.6e-70 270.4 461 41.6
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 4.4e-70 269.6 491 42.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.4e-70 269.6 454 41.9
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 3.7e-69 266.5 449 43.2
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.3e-69 265.8 460 40.7
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.1e-68 265.0 460 42.2
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.1e-68 263.5 458 42.8
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.0e-66 258.5 404 45.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.7e-66 257.7 462 38.5
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.9e-66 256.9 431 45.0
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 7.2e-65 252.3 403 45.9
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.2e-64 251.5 461 40.1
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.2e-64 251.5 459 40.1
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.8e-63 247.7 460 40.4
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.0e-63 246.9 365 47.7
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.0e-63 246.9 439 42.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.5e-62 244.6 493 40.0
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 4.4e-62 243.0 469 39.7
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 2.2e-61 240.7 403 41.9
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 5.9e-59 232.6 464 39.7
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.1e-56 224.2 465 38.7
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 4.7e-56 223.0 463 37.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.0e-55 221.9 419 39.6
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 3.0e-55 220.3 453 38.4
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 4.0e-55 219.9 416 40.6
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.2e-53 212.2 454 37.7
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.1e-52 211.8 462 36.8
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.4e-52 211.5 389 40.1
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.3e-50 204.9 469 35.4
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 8.5e-50 202.2 325 42.8
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 4.2e-49 199.9 225 56.0
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.2e-49 199.9 459 37.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.2e-48 198.4 428 35.5
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 5.2e-47 193.0 325 41.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.2e-47 193.0 455 34.9
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-45 188.3 406 36.9
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.5e-42 176.0 213 54.9
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.8e-40 170.6 409 35.7
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.4e-39 168.3 407 35.6
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 5.2e-39 166.4 383 36.6
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 6.8e-39 166.0 349 37.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 9.8e-38 162.2 447 33.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.2e-37 161.0 409 33.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.7e-37 160.2 292 39.0
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 2.3e-34 151.0 405 33.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 3.8e-34 150.2 234 43.6
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 8.6e-34 149.1 249 44.2
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.5e-33 145.6 117 64.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.0e-31 142.1 275 37.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.0e-31 142.1 407 32.2
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.0e-31 140.2 213 46.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.5e-30 138.3 406 31.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.0e-30 137.9 474 27.6
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 4.9e-29 133.3 405 30.4
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 7.8e-27 125.9 407 29.7
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.0e-26 125.6 191 43.5
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 5.0e-26 123.2 407 30.0
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 5.0e-26 123.2 407 30.0
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 5.0e-26 123.2 406 30.3
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 5.0e-26 123.2 406 30.3
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 5.0e-26 123.2 379 32.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.9e-25 121.3 406 30.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 4.7e-24 116.7 374 30.5
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.8e-23 114.8 359 32.9
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 6.8e-23 112.8 405 29.4
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.2e-22 112.1 165 48.5
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.2e-22 112.1 114 57.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.5e-22 111.7 240 37.1
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.4e-21 106.3 406 28.6
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.4e-20 105.1 206 39.3
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 4.6e-19 100.1 406 27.8
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.6e-19 100.1 185 34.6
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.7e-18 98.2 407 27.5
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-16 92.0 74 66.2
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.8e-15 88.2 318 29.9
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.6e-14 84.3 82 62.2
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 6.6e-10 69.7 231 32.0
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 9.5e-09 65.9 97 41.2
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 8.9e-07 59.3 89 38.2


User provided reference genes

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