Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.8e-145 517.7 240 100.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.9e-125 452.6 240 85.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 7.2e-125 450.7 238 87.8
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 7.2e-125 450.7 240 86.7
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.4e-125 450.3 240 85.4
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 1.6e-124 449.5 240 85.8
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 2.1e-124 449.1 238 87.4
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.7e-124 448.7 232 86.6
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 7.9e-124 447.2 240 85.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 7.9e-124 447.2 240 85.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.4e-123 446.4 240 84.2
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.3e-123 445.7 237 83.5
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.3e-123 445.7 240 82.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.3e-123 445.7 240 84.6
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.3e-123 445.7 240 85.0
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.3e-123 445.7 238 85.7
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.3e-123 445.7 240 85.8
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.0e-123 445.3 240 85.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 5.2e-123 444.5 237 84.4
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 8.8e-123 443.7 232 85.8
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.1e-122 443.4 240 83.3
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.1e-122 443.4 240 84.2
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.1e-122 443.4 240 84.2
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.5e-122 443.0 238 81.9
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.0e-122 442.6 238 84.9
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 2.6e-122 442.2 238 85.3
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.4e-122 441.4 240 83.8
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 5.7e-122 441.0 237 84.8
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 5.7e-122 441.0 240 84.2
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 5.7e-122 441.0 240 84.2
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.4e-122 440.7 239 81.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 9.7e-122 440.3 239 81.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 9.7e-122 440.3 240 84.2
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.3e-121 439.9 232 85.8
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.7e-121 439.5 237 84.4
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.1e-120 436.8 237 83.5
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.1e-120 436.8 240 81.7
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.1e-120 436.8 240 83.3
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.8e-120 436.0 238 83.2
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.4e-120 435.6 231 85.3
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 4.1e-120 434.9 238 80.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 9.1e-120 433.7 232 86.2
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.2e-119 433.3 240 82.1
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.6e-119 433.0 238 84.0
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.0e-119 432.6 232 84.9
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 2.0e-119 432.6 238 81.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.5e-119 431.8 233 81.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.9e-119 431.0 234 81.2
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.9e-119 431.0 234 81.2
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.9e-119 431.0 263 76.4
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 7.7e-119 430.6 240 81.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.8e-118 428.3 240 82.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 5.0e-118 427.9 238 83.2
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 6.5e-118 427.6 234 80.8
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 6.5e-118 427.6 240 80.4
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 8.5e-118 427.2 240 82.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 8.5e-118 427.2 238 80.3
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.9e-117 426.0 229 83.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.5e-117 425.6 234 80.3
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.2e-117 425.2 240 81.7
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 4.2e-117 424.9 231 81.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 5.5e-117 424.5 238 80.3
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 9.4e-117 423.7 238 80.7
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.2e-116 423.3 234 82.1
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.6e-116 422.9 238 79.8
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.1e-116 422.5 229 82.1
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.7e-116 422.2 241 81.3
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 3.6e-116 421.8 238 81.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.7e-116 421.4 238 81.9
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 4.7e-116 421.4 240 80.4
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.4e-115 419.9 238 80.3
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 3.0e-115 418.7 232 81.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 8.8e-115 417.2 241 77.2
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 8.8e-115 417.2 231 81.8
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.5e-114 416.4 232 81.0
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.3e-114 415.2 239 79.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 4.4e-114 414.8 240 78.8
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.4e-114 414.8 240 79.6
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 7.5e-114 414.1 238 76.9
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 7.5e-114 414.1 232 80.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.7e-113 412.9 238 78.2
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.2e-113 412.5 224 82.6
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.1e-112 410.2 236 77.1
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.8e-112 409.5 238 77.7
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.8e-112 409.5 232 78.0
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.8e-112 409.5 238 76.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.3e-112 407.9 240 76.7
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 7.0e-112 407.5 232 79.7
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 9.1e-112 407.1 226 81.0
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.0e-111 406.0 236 76.7
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 5.9e-111 404.4 236 78.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.9e-111 404.4 238 76.1
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.0e-110 403.7 236 76.3
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.0e-110 403.7 240 77.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-110 402.5 232 77.2
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 5.0e-110 401.4 238 74.8
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 6.5e-110 401.0 238 76.1
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.9e-109 399.4 238 75.6
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-109 399.4 240 78.3
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.5e-109 397.9 238 76.1
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.5e-109 397.9 233 78.5
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.2e-108 396.7 237 75.9
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.6e-108 396.4 238 75.6
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 8.0e-108 394.0 239 77.8
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.8e-107 392.9 298 64.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 4.8e-105 384.8 239 74.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.1e-104 383.6 236 73.7
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.0e-103 379.4 240 74.2
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.5e-103 378.3 240 75.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.7e-102 376.3 278 64.0
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.2e-102 375.9 202 82.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.1e-101 373.6 202 82.2
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.8e-99 364.0 202 81.7
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.6e-98 362.5 240 74.2
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-96 357.1 192 85.9
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.5e-93 345.9 184 84.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.2e-92 343.6 245 65.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.7e-86 323.2 228 64.5
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.3e-86 322.8 226 65.5
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.6e-84 316.6 225 61.8
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.4e-80 303.5 224 63.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.3e-77 292.0 223 61.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.1e-76 287.7 232 62.1
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 8.1e-76 287.7 221 62.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.6e-74 282.7 217 64.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.7e-73 280.0 152 84.9
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-72 277.3 152 83.6
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-72 277.3 152 83.6
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.2e-71 273.9 169 76.9
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.1e-71 273.1 149 82.6
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 3.0e-70 269.2 152 79.6
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.1e-68 261.2 151 79.5
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.9e-67 257.7 148 79.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 3.5e-63 245.7 209 56.5
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.1e-61 240.7 148 75.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 6.2e-60 235.0 191 61.3
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 6.4e-57 224.9 171 60.2
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-56 224.2 220 51.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.5e-53 213.0 242 47.9
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 5.6e-53 211.8 229 51.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 5.8e-50 201.8 223 47.5
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.4e-48 196.4 159 63.5
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 7.1e-48 194.9 151 57.6
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.5e-47 192.6 107 86.9
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.6e-44 183.7 221 44.3
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.6e-42 176.4 150 56.0
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.4e-41 171.8 94 87.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.9e-40 170.2 90 90.0
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.1e-38 162.2 128 57.8
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 8.7e-38 161.4 124 57.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.4e-35 154.1 82 79.3
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.7e-28 129.4 81 71.6
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.5e-16 90.1 50 72.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.5e-16 90.1 50 72.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 2.3e-14 83.6 54 70.4
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 3.3e-13 79.7 315 25.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.7e-07 60.1 160 27.5
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 3.9e-06 56.2 159 28.3
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 6.7e-06 55.5 168 28.0


User provided reference genes

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