Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 7.6e-264 913.3 463 100.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 3.2e-190 668.7 466 75.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 8.8e-188 660.6 463 72.4
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 6.3e-186 654.4 468 73.1
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.5e-184 648.7 465 72.3
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.7e-183 646.4 464 71.1
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 5.0e-183 644.8 462 72.1
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.0e-183 644.8 462 72.3
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 7.2e-182 641.0 466 71.5
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.7e-181 639.0 466 71.9
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.6e-181 638.6 464 70.9
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 6.1e-181 637.9 465 70.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 8.0e-181 637.5 469 69.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.0e-180 635.6 468 70.7
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.2e-179 633.6 429 75.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 4.4e-179 631.7 464 71.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 4.4e-179 631.7 429 74.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 5.7e-179 631.3 432 72.2
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 9.8e-179 630.6 429 74.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.7e-178 628.6 429 73.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.4e-177 626.7 431 73.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.4e-177 625.9 463 69.3
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 4.1e-177 625.2 446 71.5
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 9.2e-177 624.0 429 73.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.2e-176 623.6 472 69.7
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.0e-176 622.9 446 71.7
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.5e-176 622.1 454 69.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 4.5e-176 621.7 453 70.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 4.5e-176 621.7 429 73.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 7.7e-176 620.9 470 68.9
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.3e-175 620.2 439 70.8
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 2.9e-175 619.0 467 68.3
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.9e-175 619.0 454 70.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 5.0e-175 618.2 431 71.9
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.0e-175 618.2 429 73.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 5.0e-175 618.2 455 69.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 6.6e-175 617.8 458 70.3
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 6.6e-175 617.8 428 72.4
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 8.6e-175 617.5 459 68.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.6e-175 617.5 429 72.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.1e-174 617.1 467 68.5
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.9e-174 616.3 428 72.4
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.9e-174 616.3 428 72.7
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.5e-174 615.9 458 68.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.5e-174 615.9 468 68.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 4.3e-174 615.1 467 67.9
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 5.6e-174 614.8 459 68.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 7.3e-174 614.4 446 71.1
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.5e-174 614.0 467 68.1
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.6e-173 613.2 470 67.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.8e-173 612.5 427 71.7
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.6e-173 612.1 467 67.7
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 4.7e-173 611.7 470 68.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 8.0e-173 610.9 430 72.3
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 8.0e-173 610.9 429 72.0
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.0e-172 610.5 429 72.3
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-172 609.4 430 72.1
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.0e-172 609.0 429 71.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.2e-171 607.1 443 69.5
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.5e-171 606.7 463 67.4
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.5e-171 606.7 443 69.5
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.0e-171 606.3 449 70.6
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 4.4e-171 605.1 456 68.9
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.7e-171 604.7 462 67.3
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 9.8e-171 604.0 505 64.6
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 6.4e-170 601.3 463 66.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.1e-169 600.5 459 67.8
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.4e-169 600.1 429 70.9
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.2e-169 599.0 459 67.5
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.7e-168 595.9 459 67.3
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.7e-168 595.9 459 67.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.5e-168 595.5 443 67.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.5e-168 595.5 492 64.2
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.3e-167 593.6 431 70.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 8.6e-167 590.9 424 71.7
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 5.6e-166 588.2 583 57.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.1e-164 582.4 434 69.8
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.0e-164 582.0 410 71.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.3e-162 577.0 444 67.8
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.7e-162 576.6 433 66.3
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.1e-161 573.9 430 67.9
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.0e-159 565.8 425 66.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.1e-158 563.9 453 66.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.4e-156 557.0 402 71.1
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 5.8e-155 551.6 383 72.6
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 3.7e-154 548.9 438 65.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.2e-153 545.8 383 72.8
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 5.4e-153 545.0 431 64.7
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.4e-153 545.0 383 72.6
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 3.0e-151 539.3 498 59.2
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.6e-151 537.7 430 63.5
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 7.3e-150 534.6 369 73.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.3e-143 513.8 430 63.7
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.3e-143 513.1 392 67.6
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.3e-142 509.2 446 61.9
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 8.1e-141 504.6 456 56.6
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.4e-140 503.8 382 65.4
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-139 500.7 376 66.5
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.9e-138 496.1 416 60.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.8e-138 495.7 412 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.2e-137 492.7 419 59.7
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.9e-130 469.5 372 66.9
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 6.6e-127 458.4 410 60.2
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.2e-123 447.6 372 61.3
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.7e-120 436.4 380 63.4
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 4.0e-116 422.5 390 60.3
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 4.3e-110 402.5 407 51.4
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.1e-109 400.2 306 69.0
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.6e-104 382.9 315 63.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.6e-104 382.9 336 60.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.6e-96 357.5 425 46.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 5.1e-95 352.4 390 51.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.3e-94 349.7 379 50.4
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.7e-93 347.4 266 67.3
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.4e-84 317.8 433 42.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.1e-84 316.2 445 40.9
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-64 251.1 170 67.6
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.8e-61 240.4 245 58.0
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.3e-57 226.9 288 45.8
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.6e-56 223.4 129 82.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.4e-54 216.5 138 79.0
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 4.1e-52 209.9 143 73.4
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.3e-50 204.1 122 80.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.0e-46 191.0 378 32.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-39 168.7 140 57.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.4e-36 158.3 141 60.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.0e-30 137.9 84 76.2
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 4.6e-27 126.7 129 59.7
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.1e-24 117.9 97 67.0
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.7e-24 116.7 95 63.2
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.0e-18 99.0 410 27.8
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.1e-18 96.7 61 72.1
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 9.6e-17 92.4 96 52.1
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 9.0e-15 85.9 49 75.5
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.8e-14 83.2 68 63.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.9e-12 78.2 62 61.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 4.0e-07 60.5 63 47.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.2e-06 58.9 38 76.3
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 1.5e-06 58.5 44 56.8
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 4.5e-06 57.0 39 69.2


User provided reference genes

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