Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.8e-87 325.9 161 100.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 4.3e-81 304.7 152 99.3
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.3e-69 266.5 148 86.5
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.2e-69 265.8 146 89.7
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.9e-69 265.4 148 86.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.9e-69 265.4 148 85.8
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.8e-69 265.0 148 86.5
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.9e-69 264.6 148 85.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 8.4e-69 263.8 148 85.8
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.9e-68 262.7 148 86.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.9e-68 262.7 148 84.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.4e-68 262.3 146 87.0
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.4e-68 262.3 146 87.0
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.4e-68 262.3 148 84.5
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 3.2e-68 261.9 151 84.8
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 5.4e-68 261.2 146 85.6
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 7.1e-68 260.8 148 85.8
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 9.2e-68 260.4 151 81.5
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 9.2e-68 260.4 148 83.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 9.2e-68 260.4 148 83.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.1e-67 259.2 147 87.1
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.1e-67 259.2 148 83.8
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.5e-67 258.5 148 81.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 4.6e-67 258.1 146 87.0
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 4.6e-67 258.1 148 82.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 6.0e-67 257.7 148 83.1
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 6.0e-67 257.7 146 84.9
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.8e-67 257.3 146 85.6
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 7.8e-67 257.3 148 84.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.0e-66 256.9 148 83.1
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.3e-66 256.5 148 83.1
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.3e-66 255.8 146 84.9
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 2.3e-66 255.8 148 82.4
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.0e-66 255.4 152 82.2
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.9e-66 255.0 152 78.9
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 3.9e-66 255.0 152 78.9
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.6e-66 253.8 148 81.1
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.6e-66 253.8 148 81.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 8.6e-66 253.8 148 81.8
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-65 253.4 150 82.7
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.1e-65 253.4 146 82.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.5e-65 253.1 150 82.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.9e-65 252.7 148 83.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.9e-65 252.7 146 82.9
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.9e-65 252.7 152 78.3
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.9e-65 252.7 148 81.8
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.5e-65 252.3 148 81.1
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 2.5e-65 252.3 148 83.1
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 4.3e-65 251.5 146 83.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 4.3e-65 251.5 148 81.1
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 7.3e-65 250.8 148 80.4
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 9.6e-65 250.4 148 83.1
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.2e-64 250.0 152 78.3
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.2e-64 250.0 148 79.1
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-64 250.0 147 83.7
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.6e-64 249.6 156 76.9
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.6e-64 249.6 146 84.9
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 2.8e-64 248.8 147 83.0
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.6e-64 248.4 148 79.1
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 4.7e-64 248.1 148 78.4
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.2e-64 247.7 146 82.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 8.1e-64 247.3 151 80.1
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.1e-63 246.9 146 80.8
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.4e-63 246.5 148 79.7
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.8e-63 246.1 148 79.1
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.8e-63 246.1 149 79.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.8e-63 246.1 148 79.1
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.4e-63 245.7 151 80.1
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.4e-63 245.7 148 79.1
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-63 245.7 148 79.1
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.1e-63 245.4 148 77.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 3.1e-63 245.4 179 69.3
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.1e-63 245.4 149 76.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.0e-63 245.0 150 74.7
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 5.2e-63 244.6 147 79.6
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 5.2e-63 244.6 148 78.4
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 6.9e-63 244.2 149 80.5
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 6.9e-63 244.2 145 80.7
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.2e-62 243.4 148 77.7
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.2e-62 243.4 148 77.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.5e-62 243.0 148 77.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.5e-62 243.0 146 79.5
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 2.0e-62 242.7 146 79.5
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 2.6e-62 242.3 147 78.2
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 2.6e-62 242.3 148 77.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.6e-62 242.3 151 76.8
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.4e-62 241.5 146 80.1
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 7.6e-62 240.7 146 76.7
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.3e-61 240.0 148 79.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-61 240.0 146 79.5
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.3e-61 240.0 148 79.1
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.2e-61 239.2 150 77.3
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 3.5e-59 231.9 142 81.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.0e-58 230.3 150 78.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 2.3e-58 229.2 193 63.7
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 2.3e-58 229.2 193 63.7
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 3.0e-58 228.8 162 69.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.6e-56 223.0 148 75.7
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.8e-56 221.5 148 73.0
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.0e-55 218.4 134 79.1
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 9.3e-52 207.2 114 85.1
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.0e-51 204.5 120 80.8
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.3e-50 203.4 153 68.0
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.6e-48 196.4 150 63.3
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.1e-48 196.1 154 63.0
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.1e-48 194.1 204 53.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.9e-47 191.0 138 69.6
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 6.9e-47 191.0 148 57.4
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 9.0e-47 190.7 120 76.7
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 9.3e-44 180.6 168 60.7
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 6.7e-42 174.5 156 57.7
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.8e-40 169.1 111 68.5
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.6e-35 153.3 146 56.8
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 3.7e-32 142.1 161 48.4
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 2.6e-30 136.0 110 59.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.6e-27 126.7 92 68.5
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 2.2e-24 116.3 158 40.5
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.7e-24 115.5 78 73.1
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 4.8e-24 115.2 112 57.1
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 6.9e-23 111.3 148 45.3
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.8e-18 96.7 71 62.0
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.1e-15 85.9 45 86.7
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.2e-14 84.0 58 69.0
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-12 77.0 51 72.5
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.7e-08 63.5 44 72.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.3e-08 61.6 30 90.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 9.1e-07 57.8 31 80.6
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 9.1e-07 57.8 31 80.6


User provided reference genes

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