Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.9e-47 191.4 89 100.0
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 5.3e-33 144.1 71 95.8
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.0e-20 103.2 83 68.7
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.4e-19 98.2 66 72.7
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 9.8e-19 96.7 66 71.2
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.3e-18 96.3 74 67.6
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.7e-18 95.9 66 71.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.2e-18 95.5 65 72.3
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.2e-18 95.5 77 66.2
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.2e-18 95.5 80 65.0
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 8.3e-18 93.6 66 69.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 4.1e-17 91.3 100 56.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 5.4e-17 90.9 72 69.4
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.0e-17 90.5 72 68.1
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 7.0e-17 90.5 72 69.4
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 9.1e-17 90.1 70 67.1
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.2e-16 89.7 71 63.4
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.2e-16 89.7 69 62.3
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.6e-16 89.4 68 66.2
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 2.7e-16 88.6 69 69.6
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.7e-16 88.6 68 69.1
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.5e-16 88.2 70 65.7
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 4.5e-16 87.8 54 75.9
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.5e-16 87.8 67 64.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 4.5e-16 87.8 77 61.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 7.7e-16 87.0 85 57.6
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 7.7e-16 87.0 85 57.6
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.0e-15 86.7 89 56.2
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.0e-15 86.7 58 74.1
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.0e-15 86.7 68 66.2
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.3e-15 86.3 87 54.0
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.3e-15 85.5 102 53.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 2.9e-15 85.1 69 66.7
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 5.0e-15 84.3 71 64.8
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 6.6e-15 84.0 72 62.5
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.6e-15 83.6 70 65.7
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 8.6e-15 83.6 74 56.8
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.1e-14 83.2 68 66.2
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.1e-14 83.2 97 55.7
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.5e-14 82.8 87 54.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.5e-14 82.0 74 55.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 3.3e-14 81.6 69 62.3
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.5e-14 80.9 67 65.7
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.2e-13 79.7 57 71.9
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.2e-13 79.7 76 59.2
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.6e-13 79.3 55 74.5
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.6e-13 79.3 63 68.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.6e-13 79.3 63 68.3
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.6e-13 79.3 66 59.1
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.6e-13 79.3 66 59.1
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.1e-13 79.0 64 59.4
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.1e-13 79.0 62 59.7
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.1e-13 79.0 60 68.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.7e-13 77.8 67 65.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 4.7e-13 77.8 65 61.5
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.7e-13 77.8 64 62.5
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.4e-12 76.3 63 65.1
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.4e-12 76.3 66 57.6
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.3e-12 75.5 63 65.1
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.3e-12 75.5 63 65.1
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 4.0e-12 74.7 66 57.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 6.8e-12 73.9 59 59.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 6.8e-12 73.9 52 69.2
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 8.9e-12 73.6 59 59.3
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-11 72.8 69 59.4
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.6e-11 72.0 59 66.1
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 5.7e-11 70.9 67 59.7
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 5.7e-11 70.9 67 59.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.7e-10 69.3 74 55.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.7e-10 68.2 76 53.9
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 4.9e-10 67.8 65 56.9
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 4.9e-10 67.8 54 63.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 6.3e-10 67.4 53 62.3
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.4e-09 66.2 77 51.9
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.4e-09 66.2 77 51.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.4e-09 66.2 64 56.2
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.4e-09 66.2 52 63.5
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.4e-09 66.2 54 63.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-09 65.9 73 56.2
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.8e-09 65.9 73 56.2
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 2.4e-09 65.5 55 69.1
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.4e-09 65.5 73 54.8
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.4e-09 65.5 72 56.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-09 65.5 73 54.8
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.4e-09 65.5 73 54.8
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 3.1e-09 65.1 72 56.9
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 3.1e-09 65.1 54 61.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 5.4e-09 64.3 55 67.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 9.2e-09 63.5 55 65.5
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 9.2e-09 63.5 54 63.0
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.2e-08 63.2 55 65.5
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.2e-08 63.2 56 57.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.7e-08 62.0 54 59.3
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.7e-08 62.0 72 56.9
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 4.5e-08 61.2 37 75.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 7.8e-08 60.5 56 62.5
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.3e-07 58.9 68 51.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 5.0e-07 57.8 82 39.0
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 5.0e-07 57.8 39 66.7
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 5.0e-07 57.8 66 47.0
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.5e-06 56.2 39 71.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.3e-06 54.7 47 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 5.6e-06 54.3 39 64.1


User provided reference genes

Program Settings