Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 6.2e-164 580.9 322 100.0
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.8e-124 449.1 301 77.4
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.4e-123 446.0 302 78.8
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.9e-121 439.1 302 77.5
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.6e-119 433.3 301 80.1
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.0e-118 430.6 302 76.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.1e-117 427.2 302 75.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.1e-117 427.2 307 73.9
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.5e-117 426.8 305 74.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 5.7e-117 424.9 305 79.3
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.7e-117 424.9 300 75.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 9.7e-117 424.1 301 74.4
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.8e-116 422.5 301 74.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-115 419.9 301 74.1
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 6.9e-115 417.9 301 73.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 9.0e-115 417.5 298 77.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.6e-114 416.0 301 73.4
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.5e-114 415.2 297 74.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 5.9e-114 414.8 302 78.5
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.0e-113 414.1 301 73.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.7e-113 413.3 297 74.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.5e-112 409.5 301 73.1
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 3.2e-112 409.1 302 73.8
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.2e-112 409.1 297 73.7
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 7.2e-112 407.9 302 72.2
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.2e-111 407.1 302 73.2
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.7e-111 406.0 300 71.7
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.0e-110 404.1 326 69.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.4e-110 403.7 302 71.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.7e-110 401.4 300 70.7
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.8e-110 401.0 300 70.7
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 8.8e-110 401.0 297 72.4
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 8.8e-110 401.0 301 70.1
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.1e-109 400.6 303 71.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.5e-109 400.2 302 71.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.0e-109 399.8 302 71.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 3.3e-109 399.1 300 70.7
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.3e-109 399.1 296 70.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.3e-109 399.1 301 70.4
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.3e-109 398.7 297 72.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 5.7e-109 398.3 304 73.7
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 9.7e-109 397.5 297 72.1
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.2e-108 396.4 291 72.9
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.8e-108 395.2 302 70.9
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.8e-108 395.2 302 70.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 4.8e-108 395.2 301 71.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 8.2e-108 394.4 301 69.8
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 8.2e-108 394.4 312 69.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.4e-107 393.7 298 71.5
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 5.3e-107 391.7 303 70.6
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 5.3e-107 391.7 296 76.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 9.1e-107 391.0 301 71.8
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.0e-106 389.8 297 70.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.7e-105 386.7 297 70.4
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.8e-105 385.6 293 71.0
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.2e-104 382.5 302 69.2
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-103 380.2 300 68.7
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.7e-103 379.4 302 68.2
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 6.1e-103 378.3 304 71.7
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.4e-102 377.1 300 68.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 3.9e-102 375.6 302 68.5
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 5.7e-101 371.7 300 67.0
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 9.7e-101 370.9 304 67.1
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 9.7e-101 370.9 303 70.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 2.2e-100 369.8 299 66.6
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.7e-100 369.0 301 67.4
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.7e-100 369.0 304 66.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.8e-99 366.7 291 67.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.8e-99 366.7 303 69.0
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.4e-99 366.3 296 67.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 4.1e-99 365.5 298 66.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-98 364.0 306 64.1
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.6e-98 363.6 303 68.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.6e-98 363.6 304 67.8
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.6e-98 363.6 293 67.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 4.5e-98 362.1 304 68.8
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.9e-98 361.7 302 70.9
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 7.7e-98 361.3 299 67.2
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.3e-97 360.5 294 65.3
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.7e-97 360.1 296 66.9
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-97 360.1 297 66.7
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.2e-97 359.8 291 65.6
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 5.0e-97 358.6 297 64.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.5e-96 357.1 312 62.8
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.5e-96 357.1 293 67.9
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.2e-96 355.9 296 64.5
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.2e-96 355.5 298 68.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.6e-95 353.6 291 65.6
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.1e-95 353.2 294 65.0
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 2.1e-95 353.2 296 64.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.7e-95 352.8 295 64.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-95 352.1 295 63.7
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 6.1e-95 351.7 297 64.0
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 6.1e-95 351.7 297 64.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.0e-94 350.9 299 65.9
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.3e-94 349.7 298 65.1
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.3e-94 349.7 297 65.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.3e-94 349.7 292 65.8
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.3e-94 349.7 302 64.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.0e-94 349.4 294 63.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.1e-93 347.4 295 63.7
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.1e-93 347.4 293 65.2
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.5e-93 347.1 297 64.0
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.0e-93 346.7 306 64.4
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 3.3e-93 345.9 302 65.2
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 4.4e-93 345.5 297 64.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 7.5e-93 344.7 300 64.7
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-92 344.0 295 63.1
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.2e-92 343.2 300 64.3
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.7e-92 342.4 306 68.3
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 6.3e-92 341.7 300 64.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.8e-91 340.1 302 63.6
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 5.3e-91 338.6 290 65.2
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.0e-90 336.7 307 62.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.5e-90 335.5 304 62.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.7e-90 334.7 307 62.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.5e-88 330.5 234 74.4
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.8e-83 313.5 235 70.6
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.2e-69 267.7 218 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.4e-67 258.8 296 58.4
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.6e-66 257.3 297 57.6
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 8.6e-65 251.5 313 53.0
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.9e-57 226.1 192 63.0
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 6.2e-55 218.8 297 53.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.0e-54 216.1 190 64.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.6e-53 213.4 294 44.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 2.6e-53 213.4 236 53.0
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 5.4e-51 205.7 324 46.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.2e-50 204.5 261 57.1
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.0e-49 199.9 216 55.6
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 4.1e-43 179.5 119 76.5
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.6e-42 177.6 322 41.6
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-41 174.9 121 72.7
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.4e-38 163.7 299 42.8
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 5.2e-38 162.5 295 37.3
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 7.3e-32 142.1 91 78.0
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.4e-30 137.9 198 41.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 9.0e-30 135.2 94 71.3
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.8e-28 129.8 111 65.8
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 4.2e-27 126.3 205 42.4
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 7.1e-27 125.6 90 68.9
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.5e-24 117.1 75 77.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 6.2e-23 112.5 129 51.2
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.9e-21 105.1 69 73.9
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 7.1e-19 99.0 161 39.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-17 95.1 165 41.2
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-17 95.1 165 41.2
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.0e-17 95.1 165 41.2
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 5.1e-17 92.8 84 64.3
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 6.7e-17 92.4 93 53.8
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-15 87.8 71 62.0
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.4e-14 84.0 111 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.5e-13 81.3 74 58.1
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.8e-09 67.8 44 75.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.8e-09 67.8 94 42.6
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-08 65.1 80 47.5
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 3.1e-06 57.0 40 67.5


User provided reference genes

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