Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.5e-259 898.3 454 100.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.8e-224 780.0 454 87.0
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.8e-224 780.0 454 87.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.0e-221 772.3 454 84.6
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.7e-221 771.9 452 86.5
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.5e-221 771.2 454 85.2
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-220 770.0 452 86.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.8e-220 768.1 454 85.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 6.6e-220 767.3 454 85.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.3e-219 764.6 454 84.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 2.1e-218 762.3 454 83.3
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 5.2e-217 757.7 454 83.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 7.5e-216 753.8 454 82.2
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 7.5e-216 753.8 454 83.3
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 2.2e-215 752.3 452 84.3
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.9e-215 751.9 454 83.0
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.9e-215 751.1 454 82.6
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.6e-213 746.1 454 82.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.0e-213 745.7 455 81.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 4.6e-213 744.6 454 80.8
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.0e-212 743.4 444 83.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.0e-212 743.4 491 78.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.0e-212 741.9 454 81.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.6e-212 740.3 454 81.7
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.6e-212 740.3 454 81.7
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.1e-211 740.0 436 84.2
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 4.3e-211 738.0 454 80.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.6e-211 737.6 455 81.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 7.3e-211 737.3 454 80.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.3e-211 737.3 454 81.7
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 8.0e-210 733.8 454 79.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 8.0e-210 733.8 453 80.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.8e-209 732.6 454 80.0
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.3e-209 732.3 454 79.5
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.1e-209 731.9 454 80.0
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.0e-209 731.5 435 83.0
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 5.2e-209 731.1 454 79.3
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 8.9e-209 730.3 453 80.4
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.5e-208 729.6 458 80.1
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.0e-208 729.2 436 83.5
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 3.4e-208 728.4 454 80.6
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.4e-208 728.4 444 81.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.8e-208 727.6 436 83.5
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 9.8e-208 726.9 454 79.1
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.3e-207 726.5 454 78.6
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.9e-207 725.3 454 80.2
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.4e-207 724.2 454 79.5
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.4e-207 724.2 452 81.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.1e-206 721.5 469 78.0
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.2e-205 719.9 435 82.1
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.2e-205 719.9 453 79.9
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.6e-205 719.5 452 81.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.6e-205 719.5 435 81.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.0e-205 719.2 415 87.0
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.7e-205 718.8 451 79.8
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.7e-205 718.8 454 78.0
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 6.0e-205 717.6 453 79.0
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 6.0e-205 717.6 454 77.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-204 716.1 477 76.3
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.7e-204 716.1 453 78.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.3e-204 715.7 454 80.0
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 3.0e-204 715.3 474 75.7
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.1e-203 713.4 457 78.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.1e-203 713.4 454 78.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.5e-203 713.0 454 77.8
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 7.3e-203 710.7 452 77.7
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.6e-202 709.5 452 78.1
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.7e-202 708.0 435 81.4
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 6.2e-202 707.6 435 81.4
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.3e-201 705.7 435 80.7
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 4.0e-201 704.9 446 78.7
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.2e-200 703.4 453 77.5
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.2e-200 703.4 433 81.8
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.5e-200 703.0 434 80.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.0e-200 702.6 455 77.4
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 7.5e-200 700.7 453 77.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.2e-199 699.1 446 78.0
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 6.4e-199 697.6 435 79.8
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 8.3e-199 697.2 434 80.0
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.9e-198 696.0 446 77.4
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.1e-198 694.9 443 77.9
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 4.1e-198 694.9 446 76.5
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.1e-198 694.1 490 74.1
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.2e-197 693.3 452 77.4
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.6e-197 693.0 435 78.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.5e-197 691.8 443 77.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 6.0e-197 691.0 452 77.4
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 6.0e-197 691.0 433 79.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 7.8e-197 690.6 490 73.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 3.0e-196 688.7 452 74.6
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.0e-196 688.7 443 77.2
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 8.6e-196 687.2 433 78.8
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 2.5e-195 685.6 452 77.7
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.3e-195 684.9 453 75.3
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.6e-195 684.5 425 81.2
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.8e-194 682.2 436 79.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 3.6e-194 681.8 429 79.0
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.6e-194 681.8 444 78.2
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.7e-194 681.4 442 76.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.7e-194 681.4 433 78.3
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.7e-194 681.4 433 78.3
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 6.2e-194 681.0 429 79.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-193 679.9 433 78.1
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.6e-192 675.6 491 70.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 7.6e-192 674.1 435 74.9
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 3.8e-191 671.8 454 74.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 8.4e-191 670.6 436 76.8
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.1e-190 668.3 455 74.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.6e-189 666.4 436 72.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.1e-187 660.2 414 78.7
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.3e-187 658.7 412 78.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 4.3e-187 658.3 453 73.3
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 8.1e-186 654.1 433 76.2
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 8.1e-186 654.1 453 72.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.4e-185 653.3 409 77.3
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.8e-184 647.9 449 69.5
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 7.1e-174 614.4 361 83.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 9.3e-174 614.0 471 66.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.7e-165 585.9 369 77.5
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 3.0e-164 582.4 359 82.5
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.1e-164 581.6 369 77.0
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.1e-163 580.5 393 69.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 8.2e-162 574.3 448 65.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.0e-160 569.7 433 68.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.8e-160 568.2 447 62.4
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.4e-148 530.4 454 60.8
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.9e-136 488.4 312 77.2
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.3e-127 460.7 448 53.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.8e-124 448.0 285 75.4
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 9.7e-123 444.5 285 75.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.2e-122 443.4 271 78.6
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 5.3e-121 438.7 272 79.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.3e-119 434.1 252 85.3
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.8e-116 423.7 426 49.5
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 5.4e-113 412.1 316 68.0
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.8e-99 365.5 220 78.2
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.6e-93 347.4 199 83.9
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 8.1e-85 318.5 195 76.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.2e-81 306.6 200 81.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.0e-67 260.8 187 69.0
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 8.1e-53 212.2 141 75.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-51 207.6 152 67.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.9e-50 203.8 147 70.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 6.2e-45 186.0 117 76.1
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 5.8e-43 179.5 189 54.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.8e-31 141.4 127 66.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.5e-22 111.7 127 49.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.7e-19 99.4 90 53.3
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.0e-10 70.1 64 54.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 5.5e-09 66.6 360 23.6
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.2e-06 58.9 112 35.7
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 4.4e-06 57.0 34 73.5


User provided reference genes

Program Settings