Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A222T57 Lonicera japonica HOM05D003185 ORTHO05D007711 1.6e-118 429.5 220 100.0
Dinv29429 Davidia involucrata HOM05D003185 ORTHO05D007711 7.9e-86 320.9 215 74.9
Actinidia35450 Actinidia chinensis HOM05D003185 ORTHO05D007711 5.1e-85 318.2 215 77.2
Ciclev10028226m.g Citrus clementina HOM05D003185 ORTHO05D007711 3.7e-83 312.0 215 70.7
Rhsim01G0207700 Rhododendron simsii HOM05D003185 ORTHO05D007711 1.8e-82 309.7 215 74.9
CSS0026325 Camellia sinensis var. sinensis HOM05D003185 ORTHO05D007711 2.4e-82 309.3 215 73.0
ECA248G1096 Erigeron canadensis HOM05D003185 ORTHO05D007711 6.9e-82 307.8 214 68.7
CSS0042724 Camellia sinensis var. sinensis HOM05D003185 ORTHO05D007711 1.0e-80 303.9 216 71.8
vmacro14358 Vaccinium macrocarpon HOM05D003185 ORTHO05D007711 1.0e-80 303.9 231 69.7
QL01p013617 Quercus lobata HOM05D003185 ORTHO05D007711 1.4e-79 300.1 214 71.0
Thecc.09G291000 Theobroma cacao HOM05D003185 ORTHO05D007711 3.2e-79 298.9 214 68.7
HanXRQChr01g0016761 Helianthus annuus HOM05D003185 ORTHO05D007711 5.5e-79 298.1 214 67.3
GSVIVG01031393001 Vitis vinifera HOM05D003185 ORTHO05D007711 5.5e-79 298.1 215 70.2
Peaxi162Scf00114g00117 Petunia axillaris HOM05D003185 ORTHO05D007711 7.1e-79 297.7 215 69.8
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 9.3e-79 297.4 215 69.3
COL.COLO4_19304 Corchorus olitorius HOM05D003185 ORTHO05D007711 3.5e-78 295.4 214 68.2
Nitab4.5_0008695g0010 Nicotiana tabacum HOM05D003185 ORTHO05D007711 1.0e-77 293.9 232 65.5
Solyc06g074510.4 Solanum lycopersicum HOM05D003185 ORTHO05D007711 1.0e-77 293.9 215 68.4
PGSC0003DMG400007149 Solanum tuberosum HOM05D003185 ORTHO05D007711 1.3e-77 293.5 214 68.7
Cc01_g09760 Coffea canephora HOM05D003185 ORTHO05D007711 8.7e-77 290.8 215 67.9
arahy.Tifrunner.gnm1.ann1.L3RF3D Arachis hypogaea HOM05D003185 ORTHO05D007711 1.5e-76 290.0 215 69.3
Duzib168G2119 Durio zibethinus HOM05D003185 ORTHO05D007711 1.9e-76 289.7 215 69.8
Sopen06g030990 Solanum pennellii HOM05D003185 ORTHO05D007711 1.9e-76 289.7 215 67.0
CiPaw.13G140700 Carya illinoinensis HOM05D003185 ORTHO05D007711 4.3e-76 288.5 215 68.4
Eucgr.J00431 Eucalyptus grandis HOM05D003185 ORTHO05D007711 4.3e-76 288.5 215 67.4
THA.LOC104799537 Tarenaya hassleriana HOM05D003185 ORTHO05D007711 4.3e-76 288.5 215 67.4
TWI31G0687 Tripterygium wilfordii HOM05D003185 ORTHO05D007711 9.6e-76 287.3 210 68.1
Cfa010078 Carpinus fangiana HOM05D003185 ORTHO05D007711 1.3e-75 287.0 215 67.0
Medtr4g055260 Medicago truncatula HOM05D003185 ORTHO05D007711 1.3e-75 287.0 215 67.0
Gorai.004G008300 Gossypium raimondii HOM05D003185 ORTHO05D007711 1.6e-75 286.6 215 69.8
PGR119G0956 Punica granatum HOM05D003185 ORTHO05D007711 2.1e-75 286.2 215 67.0
TAR633G1921 Trochodendron aralioides HOM05D003185 ORTHO05D007711 2.1e-75 286.2 221 68.3
Lsat_1_v5_gn_1_62161 Lactuca sativa HOM05D003185 ORTHO05D007711 2.8e-75 285.8 221 64.7
Lj3g0000356 Lotus japonicus HOM05D003185 ORTHO05D007711 2.8e-75 285.8 215 66.5
arahy.Tifrunner.gnm1.ann1.7SQ1BH Arachis hypogaea HOM05D003185 ORTHO05D007711 8.2e-75 284.3 215 68.4
MD11G1158000 Malus domestica HOM05D003185 ORTHO05D007711 8.2e-75 284.3 224 66.1
Potri.004G187700 Populus trichocarpa HOM05D003185 ORTHO05D007711 8.2e-75 284.3 215 67.4
Manes.11G157700 Manihot esculenta HOM05D003185 ORTHO05D007711 1.1e-74 283.9 215 67.4
Nn6g35036 Nelumbo nucifera HOM05D003185 ORTHO05D007711 1.1e-74 283.9 215 67.4
Phvul.011G090600 Phaseolus vulgaris HOM05D003185 ORTHO05D007711 5.3e-74 281.6 215 65.1
Prupe.6G119800 Prunus persica HOM05D003185 ORTHO05D007711 5.3e-74 281.6 215 65.1
Gohir.A08G003700 Gossypium hirsutum HOM05D003185 ORTHO05D007711 2.6e-73 279.3 215 68.4
RcHm_v2.0_Chr5g0043311 Rosa chinensis HOM05D003185 ORTHO05D007711 2.6e-73 279.3 214 65.9
TPR.G15587 Trifolium pratense HOM05D003185 ORTHO05D007711 2.6e-73 279.3 214 65.4
Psat7g143120 Pisum sativum HOM05D003185 ORTHO05D007711 3.4e-73 278.9 215 67.0
Ca_19376_v3 Cicer arietinum L. HOM05D003185 ORTHO05D007711 4.5e-73 278.5 223 64.6
FvH4_3g24210 Fragaria vesca HOM05D003185 ORTHO05D007711 2.2e-72 276.2 211 64.9
DCAR_012167 Daucus carota HOM05D003185 ORTHO05D007711 6.5e-72 274.6 215 67.4
VMungo1127G1861 Vigna mungo HOM05D003185 ORTHO05D007711 3.2e-71 272.3 215 63.3
Actinidia37095 Actinidia chinensis HOM05D003185 ORTHO05D007711 5.5e-71 271.6 214 67.8
Glyma.12G085900 Glycine max HOM05D003185 ORTHO05D007711 5.5e-71 271.6 215 64.2
CsaV3_6G014770 Cucumis sativus L. HOM05D003185 ORTHO05D007711 2.7e-70 269.2 212 62.7
MBI17_g11652_MAGBIO Magnolia biondii HOM05D003185 ORTHO05D007711 2.7e-70 269.2 236 57.6
CAN.G919.9 Capsicum annuum HOM05D003185 ORTHO05D007711 4.6e-70 268.5 228 62.7
Aqoxy2G01378 Aquilegia oxysepala HOM05D003185 ORTHO05D007711 6.1e-70 268.1 214 63.1
FAN21G2169 Fragaria x ananassa HOM05D003185 ORTHO05D007711 6.1e-70 268.1 232 60.8
PSO384G2827 Papaver somniferum HOM05D003185 ORTHO05D007711 7.9e-70 267.7 214 64.0
SalBow6G4264 Salvia bowleyana HOM05D003185 ORTHO05D007711 1.0e-69 267.3 216 65.3
Haze_23444 Corylus avellana HOM05D003185 ORTHO05D007711 1.8e-69 266.5 215 63.3
FAN11G0876 Fragaria x ananassa HOM05D003185 ORTHO05D007711 8.7e-69 264.2 231 59.3
CANSAT54G2969 Cannabis sativa HOM05D003185 ORTHO05D007711 1.1e-68 263.8 215 66.0
Lalb_Chr01g0004771 Lupinus albus HOM05D003185 ORTHO05D007711 1.1e-68 263.8 214 63.6
PSO339G3172 Papaver somniferum HOM05D003185 ORTHO05D007711 1.5e-68 263.5 214 62.6
Migut.D02358 Erythranthe guttata HOM05D003185 ORTHO05D007711 1.9e-68 263.1 215 63.3
Gohir.D08G014000 Gossypium hirsutum HOM05D003185 ORTHO05D007711 2.4e-66 256.1 215 64.7
MELO3C021448.2 Cucumis melo HOM05D003185 ORTHO05D007711 5.3e-66 255.0 214 60.7
Sed0005848 Sechium edule HOM05D003185 ORTHO05D007711 5.3e-66 255.0 219 58.9
Thhalv10013362m.g Eutrema salsugineum HOM05D003185 ORTHO05D007711 1.2e-65 253.8 216 62.0
Atru.BG.121.p Acer truncatum HOM05D003185 ORTHO05D007711 2.6e-65 252.7 218 62.4
AL6G33640 Arabidopsis lyrata HOM05D003185 ORTHO05D007711 5.9e-65 251.5 218 60.1
ClCG02G021940 Citrullus lanatus HOM05D003185 ORTHO05D007711 7.7e-65 251.1 215 59.5
Sp6g22720 Schrenkiella parvula HOM05D003185 ORTHO05D007711 1.7e-64 250.0 215 61.4
SGA_v2.0_scaffold27G11620 Striga asiatica HOM05D003185 ORTHO05D007711 2.9e-64 249.2 214 60.3
EL10Ac9g21089 Beta vulgaris HOM05D003185 ORTHO05D007711 8.5e-64 247.7 215 60.0
Carub.0006s2034 Capsella rubella HOM05D003185 ORTHO05D007711 2.7e-62 242.7 218 58.7
CDE06G0630 Ceratophyllum demersum HOM05D003185 ORTHO05D007711 1.0e-61 240.7 211 59.7
BcaB05g22717 Brassica carinata HOM05D003185 ORTHO05D007711 5.1e-61 238.4 214 60.3
CARHR190960 Cardamine hirsuta HOM05D003185 ORTHO05D007711 5.1e-61 238.4 215 61.4
unitig_747.g21955 Utricularia gibba HOM05D003185 ORTHO05D007711 1.5e-60 236.9 216 60.2
AUR62023927 Chenopodium quinoa HOM05D003185 ORTHO05D007711 2.6e-60 236.1 214 57.5
Os11g0150100 Oryza sativa ssp. japonica HOM05D003185 ORTHO05D007711 3.3e-60 235.7 215 55.8
BNapus_Darmor_BZH_scaffold_38p00540 Brassica napus HOM05D003185 ORTHO05D007711 1.1e-58 230.7 218 57.8
BcaC03g13898 Brassica carinata HOM05D003185 ORTHO05D007711 1.4e-58 230.3 214 59.3
BolC2t07176H Brassica oleracea HOM05D003185 ORTHO05D007711 5.3e-58 228.4 227 55.5
BraA02t05669Z Brassica rapa HOM05D003185 ORTHO05D007711 6.9e-58 228.0 230 54.3
Nitab4.5_0003082g0060 Nicotiana tabacum HOM05D003185 ORTHO05D007711 9.1e-58 227.6 215 56.7
Aa31LG1G13020 Aethionema arabicum HOM05D003185 ORTHO05D007711 5.9e-57 224.9 246 52.0
Zm00001eb196880 Zea mays HOM05D003185 ORTHO05D007711 7.7e-57 224.6 215 55.3
C02p11040 Brassica napus HOM05D003185 ORTHO05D007711 1.0e-56 224.2 214 58.4
HPP92_009049 Vanilla planifolia HOM05D003185 ORTHO05D007711 6.5e-56 221.5 214 55.1
ATR0820G288 Amborella trichopoda HOM05D003185 ORTHO05D007711 4.2e-55 218.8 220 55.5
Hund00771 Selenicereus undatus HOM05D003185 ORTHO05D007711 6.1e-54 214.9 175 59.4
arahy.Tifrunner.gnm1.ann1.BKN5FL Arachis hypogaea HOM05D003185 ORTHO05D007711 1.3e-51 207.2 215 54.0
AT5G22620 Arabidopsis thaliana HOM05D003185 ORTHO05D007711 1.7e-51 206.8 215 53.5
arahy.Tifrunner.gnm1.ann1.N15JJB Arachis hypogaea HOM05D003185 ORTHO05D007711 7.0e-42 174.9 167 59.3
Cpa.g.sc47.69 Carica papaya HOM05D003185 ORTHO05D007711 3.5e-41 172.6 138 58.7
SEGI_02723 Sequoiadendron giganteum HOM05D003185 ORTHO05D007711 4.5e-41 172.2 191 50.3
Ah.01g004570 Amaranthus hybridus HOM05D003185 ORTHO05D007711 5.9e-41 171.8 215 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2291 Anthoceros agrestis HOM05D003185 ORTHO05D007711 1.5e-39 167.2 224 42.0
SEGI_21285 Sequoiadendron giganteum HOM05D003185 ORTHO05D007711 1.5e-39 167.2 191 49.7
Pp3c25_8910 Physcomitrium patens HOM05D003185 ORTHO05D007711 3.2e-39 166.0 228 41.2
Hma1.2p1_0097F.1_g047990 Hydrangea macrophylla HOM05D003185 ORTHO05D007711 8.0e-38 161.4 118 73.7
SMO367G1083 Selaginella moellendorffii HOM05D003185 ORTHO05D007711 8.0e-38 161.4 221 43.0
CBR_g223 Chara braunii HOM05D003185 ORTHO05D007711 2.6e-36 156.4 234 39.7
Sc21g0004730 Simmondsia chinensis HOM05D003185 ORTHO05D007711 1.3e-35 154.1 120 69.2
Sabra04G0126600 Salix brachista HOM05D003185 ORTHO05D007711 4.1e-34 149.1 185 50.8
Glyma.11G188800 Glycine max HOM05D003185 ORTHO05D007711 3.8e-32 142.5 119 65.5
VMungo0647G2586 Vigna mungo HOM05D009237 ORTHO05D010310 4.1e-26 122.5 87 59.8
AUR62038312 Chenopodium quinoa HOM05D003185 ORTHO05D007711 5.9e-25 118.6 127 53.5
Nn4g23245 Nelumbo nucifera HOM05D003185 ORTHO05D007711 5.0e-24 115.5 88 61.4
Hma1.2p1_0097F.1_g048010 Hydrangea macrophylla HOM05D003185 ORTHO05D046562 6.6e-24 115.2 77 75.3
Oeu010656.1 Olea europaea HOM05D003185 ORTHO05D007711 1.5e-23 114.0 213 36.2
Psat0ss2518g0360 Pisum sativum HOM05D003185 ORTHO05D007711 3.4e-20 102.8 95 64.2
Lsat_1_v5_gn_6_93560 Lactuca sativa HOM05D003185 ORTHO05D007711 4.4e-20 102.4 99 59.6
Mapoly0014s0161 Marchantia polymorpha HOM05D003185 ORTHO05D007711 9.8e-20 101.3 218 31.7
FAN25G0027 Fragaria x ananassa HOM05D003185 ORTHO05D046562 9.2e-18 94.7 77 64.9
Hma1.2p1_0097F.1_g048020 Hydrangea macrophylla HOM05D003185 ORTHO05D007711 1.6e-17 94.0 49 79.6
Lsat_1_v5_gn_2_75321 Lactuca sativa HOM05D003185 ORTHO05D007711 5.6e-15 85.5 101 49.5


User provided reference genes

Program Settings