Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 0.0e+00 1459.9 762 100.0
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 2.4e-251 872.5 773 62.7
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 9.2e-251 870.5 770 61.6
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 6.0e-250 867.8 770 61.3
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 6.6e-249 864.4 780 59.5
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 2.4e-246 855.9 761 62.0
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 8.9e-246 854.0 766 60.2
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 3.5e-242 842.0 760 59.9
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 4.6e-242 841.6 787 60.9
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 1.3e-241 840.1 804 59.8
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 3.0e-241 839.0 788 58.2
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.0e-241 839.0 788 58.2
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.9e-241 838.6 781 59.2
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 6.6e-241 837.8 784 58.5
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 2.5e-240 835.9 760 61.1
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 6.9e-238 827.8 773 57.4
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 9.0e-238 827.4 782 59.6
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 1.7e-236 823.2 783 57.7
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 9.3e-235 817.4 803 59.7
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 1.2e-234 817.0 793 57.0
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.0e-233 813.9 776 56.4
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 8.7e-233 810.8 792 58.1
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 2.5e-232 809.3 793 57.1
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 4.3e-232 808.5 799 56.9
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 5.6e-232 808.1 798 56.0
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 2.1e-231 806.2 797 55.5
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 3.6e-231 805.4 667 64.3
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 4.8e-231 805.1 745 57.6
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 6.2e-231 804.7 808 56.2
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 6.2e-231 804.7 796 54.8
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.4e-230 803.5 785 59.1
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 9.0e-230 800.8 775 57.7
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 2.0e-229 799.7 663 64.9
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 2.6e-229 799.3 525 70.7
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 5.8e-229 798.1 786 56.0
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 4.9e-228 795.0 794 58.6
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.9e-227 793.1 781 57.4
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 3.2e-227 792.3 790 58.6
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 5.5e-227 791.6 793 56.9
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 9.3e-227 790.8 782 56.1
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.2e-226 790.4 524 69.7
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 1.0e-225 787.3 788 57.7
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.8e-225 786.6 793 58.6
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 4.3e-224 781.9 778 57.1
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 1.6e-223 780.0 800 56.9
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.1e-223 779.6 743 59.8
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 4.8e-223 778.5 790 57.7
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 6.2e-223 778.1 792 54.2
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.8e-222 776.5 527 68.1
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.8e-222 776.5 787 57.7
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 5.3e-222 775.0 784 57.8
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 5.3e-222 775.0 797 56.7
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.5e-221 773.5 787 56.4
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.0e-221 773.1 527 67.7
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 5.8e-221 771.5 793 55.7
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 1.1e-219 767.3 784 56.5
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 2.1e-218 763.1 531 66.5
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 4.6e-218 761.9 803 54.9
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 4.6e-218 761.9 723 59.9
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.8e-217 760.0 692 60.5
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 2.3e-217 759.6 774 55.7
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 1.1e-216 757.3 780 56.9
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 1.5e-216 756.9 814 54.1
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 4.3e-216 755.4 781 55.8
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 4.3e-216 755.4 752 58.1
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 5.7e-216 755.0 803 53.7
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 1.6e-215 753.4 724 58.7
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 3.7e-215 752.3 717 57.7
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 1.4e-214 750.4 687 62.7
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 1.4e-214 750.4 749 57.3
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.2e-213 747.3 668 60.5
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 2.6e-213 746.1 704 59.1
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 7.6e-213 744.6 814 53.9
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 5.0e-212 741.9 787 57.3
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 4.2e-211 738.8 717 57.2
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 4.2e-211 738.8 789 55.8
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 1.9e-208 729.9 776 52.3
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 1.4e-206 723.8 724 57.9
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 6.9e-206 721.5 790 52.5
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 3.6e-202 709.1 816 51.7
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 2.3e-201 706.4 785 54.1
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.9e-201 705.7 872 50.0
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 3.7e-199 699.1 880 50.9
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 3.7e-199 699.1 773 51.2
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 1.8e-198 696.8 880 49.2
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 3.3e-192 676.0 788 52.3
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.0e-169 601.3 611 57.1
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 4.9e-167 592.4 563 57.4
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 6.6e-156 555.4 789 44.7
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.7e-146 522.7 330 70.3
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 6.8e-145 518.8 535 49.7
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 1.2e-144 518.1 473 53.7
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.8e-137 494.2 321 70.4
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.3e-132 477.2 432 55.3
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 2.0e-128 464.2 387 59.9
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 2.0e-128 464.2 404 64.6
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 4.4e-128 463.0 491 57.8
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 9.3e-118 428.7 264 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 4.9e-103 379.8 343 52.5
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 7.9e-93 345.9 370 48.9
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 8.8e-92 342.4 410 56.3
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 2.0e-75 288.1 182 70.9
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 1.4e-73 282.0 517 42.6
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 3.6e-69 267.3 198 66.7
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 1.3e-66 258.8 339 44.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 2.7e-48 198.0 172 55.2
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.0e-43 181.8 356 46.9
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 3.7e-26 124.4 83 67.5
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-25 120.6 363 29.2
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.1e-25 120.2 117 53.0
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 1.5e-19 102.4 168 43.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.7e-15 89.0 75 60.0
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 3.9e-15 87.8 72 50.0
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.5e-14 85.1 66 54.5
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 5.1e-07 60.8 67 56.7


User provided reference genes

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