Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 2.0e-42 175.3 83 100.0
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 4.3e-37 157.5 83 90.4
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 4.1e-35 151.0 79 86.1
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 2.0e-34 148.7 78 85.9
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 3.4e-34 147.9 79 83.5
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.3e-33 146.0 83 77.1
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.9e-33 144.8 81 81.5
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 2.9e-33 144.8 83 75.9
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 6.5e-33 143.7 83 75.9
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 8.5e-33 143.3 81 79.0
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 8.5e-33 143.3 79 78.5
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 1.9e-32 142.1 77 85.7
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 3.2e-32 141.4 79 77.2
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 4.2e-32 141.0 82 74.4
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 4.2e-32 141.0 82 74.4
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 5.5e-32 140.6 82 74.4
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 2.7e-31 138.3 75 81.3
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 3.6e-31 137.9 78 82.1
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 6.1e-31 137.1 78 82.1
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 6.1e-31 137.1 77 81.8
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.0e-30 136.3 77 76.6
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 1.4e-30 136.0 82 70.7
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.4e-30 136.0 77 80.5
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.4e-30 136.0 79 74.7
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.4e-30 136.0 79 74.7
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.8e-30 135.6 79 75.9
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.0e-30 134.8 76 76.3
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 3.9e-30 134.4 79 75.9
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 8.8e-30 133.3 75 77.3
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.1e-29 132.9 77 74.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 1.5e-29 132.5 77 77.9
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.5e-29 132.5 79 73.4
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 2.0e-29 132.1 78 71.8
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.0e-29 132.1 77 71.4
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 2.0e-29 132.1 79 75.9
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 2.0e-29 132.1 74 77.0
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 3.3e-29 131.3 77 71.4
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 4.4e-29 131.0 79 73.4
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 4.4e-29 131.0 78 75.6
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 5.7e-29 130.6 75 74.7
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 5.7e-29 130.6 78 73.1
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 7.4e-29 130.2 78 75.6
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 7.4e-29 130.2 76 75.0
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 7.4e-29 130.2 74 79.7
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 9.7e-29 129.8 77 72.7
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 9.7e-29 129.8 74 79.7
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 9.7e-29 129.8 74 75.7
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 1.3e-28 129.4 76 73.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 1.3e-28 129.4 77 71.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.3e-28 129.4 77 71.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.3e-28 129.4 78 74.4
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 1.7e-28 129.0 79 72.2
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 2.2e-28 128.6 75 73.3
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.2e-28 128.6 74 74.3
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.2e-28 128.6 74 74.3
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 2.2e-28 128.6 74 74.3
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 2.2e-28 128.6 74 74.3
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 2.2e-28 128.6 79 72.2
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 2.8e-28 128.3 74 74.3
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.8e-28 128.3 74 74.3
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 2.8e-28 128.3 73 75.3
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 3.7e-28 127.9 80 72.5
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 3.7e-28 127.9 75 76.0
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 4.8e-28 127.5 75 73.3
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 6.3e-28 127.1 77 74.0
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 6.3e-28 127.1 71 76.1
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 8.2e-28 126.7 77 74.0
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 8.2e-28 126.7 77 74.0
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 8.2e-28 126.7 78 73.1
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 8.2e-28 126.7 77 71.4
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 1.4e-27 125.9 78 69.2
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 1.4e-27 125.9 74 74.3
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.4e-27 125.9 72 77.8
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 1.8e-27 125.6 84 65.5
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 1.8e-27 125.6 73 71.2
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 2.4e-27 125.2 77 71.4
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 3.1e-27 124.8 78 67.9
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 3.1e-27 124.8 79 70.9
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 4.1e-27 124.4 77 72.7
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 4.1e-27 124.4 78 69.2
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 4.1e-27 124.4 74 73.0
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 5.3e-27 124.0 78 67.9
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.3e-27 124.0 78 67.9
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 5.3e-27 124.0 78 67.9
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 7.0e-27 123.6 78 71.8
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 9.1e-27 123.2 75 74.7
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 1.2e-26 122.9 77 70.1
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.2e-26 122.9 78 66.7
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.2e-26 122.9 79 67.1
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.6e-26 122.5 75 76.0
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 1.6e-26 122.5 77 70.1
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 2.0e-26 122.1 77 75.3
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 2.6e-26 121.7 77 71.4
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.6e-26 121.7 77 68.8
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 2.6e-26 121.7 75 73.3
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.5e-26 121.3 78 66.7
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.0e-25 119.8 78 65.4
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 1.0e-25 119.8 74 74.3
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 1.3e-25 119.4 73 72.6
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 1.3e-25 119.4 73 71.2
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 1.7e-25 119.0 78 66.7
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.7e-25 119.0 78 65.4
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.7e-25 119.0 75 70.7
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 3.8e-25 117.9 72 72.2
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 3.8e-25 117.9 75 73.3
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 5.0e-25 117.5 81 61.7
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 6.5e-25 117.1 82 63.4
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 8.5e-25 116.7 67 76.1
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.1e-24 116.3 72 70.8
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 1.5e-24 115.9 69 72.5
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 2.5e-24 115.2 82 63.4
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 3.2e-24 114.8 69 69.6
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 7.2e-24 113.6 79 60.8
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.2e-23 112.8 73 65.8
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 5.2e-22 107.5 73 61.6
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 2.6e-21 105.1 70 64.3
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.8e-20 101.7 76 56.6
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 7.0e-19 97.1 69 62.3
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 7.0e-19 97.1 60 70.0
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.0e-18 95.5 71 59.2
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.9e-18 94.0 77 58.4
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 7.7e-18 93.6 72 56.9
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 7.7e-18 93.6 69 58.0
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.8e-17 91.3 56 71.4
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 3.7e-12 74.7 77 48.1
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.7e-10 68.6 83 42.2
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 1.9e-08 62.4 64 43.8
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 3.2e-08 61.6 78 35.9
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 4.2e-08 61.2 71 40.8
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 4.2e-08 61.2 40 67.5
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 9.4e-08 60.1 76 44.7
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 1.2e-07 59.7 56 48.2
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 6.1e-07 57.4 71 39.4
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 1.0e-06 56.6 53 41.5
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 1.4e-06 56.2 57 40.4
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 1.8e-06 55.8 65 35.4
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 3.0e-06 55.1 70 37.1
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 4.0e-06 54.7 71 36.6
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 5.2e-06 54.3 52 40.4
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 6.8e-06 53.9 53 39.6


User provided reference genes

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