Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.5e-281 972.2 503 100.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.7e-197 693.0 476 74.2
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.1e-189 664.8 483 73.1
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 8.7e-189 664.1 475 73.7
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 8.7e-189 664.1 476 73.1
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.9e-188 662.9 443 76.1
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.3e-188 661.8 475 73.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.1e-186 657.1 476 71.4
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.4e-186 656.0 475 73.3
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 9.3e-183 644.0 468 70.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.6e-182 643.3 476 70.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.1e-182 642.9 476 71.4
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 6.0e-182 641.3 481 70.3
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.0e-181 640.6 499 67.7
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 3.9e-181 638.6 478 70.1
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-180 637.1 476 70.2
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 5.6e-180 634.8 477 71.5
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.8e-179 632.5 473 69.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.5e-177 626.7 476 67.4
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.5e-177 626.7 468 67.1
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.0e-177 626.3 468 67.1
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.8e-177 624.8 467 67.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 7.6e-177 624.4 468 67.5
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 9.9e-177 624.0 516 66.3
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 6.4e-176 621.3 473 68.5
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 8.4e-176 620.9 481 67.2
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 6.0e-174 614.8 481 68.2
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.8e-173 613.2 476 67.4
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 7.4e-172 607.8 476 67.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 9.6e-172 607.4 473 67.7
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 9.6e-172 607.4 473 65.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-171 607.1 480 66.7
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.1e-171 606.3 461 66.2
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-171 605.9 480 66.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 4.8e-171 605.1 473 66.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.8e-170 603.2 481 65.1
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.4e-170 602.8 473 66.2
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 3.1e-170 602.4 476 66.0
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 4.0e-170 602.1 476 66.0
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.0e-170 602.1 477 67.1
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.5e-169 600.1 473 67.0
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.0e-169 599.7 476 66.2
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 4.5e-169 598.6 467 65.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 5.8e-169 598.2 476 65.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 7.6e-169 597.8 476 66.2
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.7e-168 596.7 476 66.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.9e-168 595.9 474 67.5
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 6.5e-168 594.7 475 66.1
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.4e-168 594.3 478 64.6
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-167 593.2 480 65.8
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 3.5e-166 589.0 476 66.2
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 7.9e-166 587.8 476 65.1
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.0e-165 587.4 476 65.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.3e-165 587.0 478 65.1
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.9e-165 585.5 479 65.3
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.3e-164 582.4 467 64.2
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 7.4e-164 581.3 475 64.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 9.7e-164 580.9 512 62.5
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 9.7e-164 580.9 468 65.6
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.1e-162 577.4 467 63.2
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.4e-162 577.0 475 63.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.8e-162 576.6 476 65.3
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 4.1e-162 575.5 467 64.0
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.0e-161 573.2 468 63.0
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 7.6e-161 571.2 467 62.3
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 7.6e-161 571.2 481 62.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.7e-160 570.1 468 62.6
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.7e-160 570.1 474 65.4
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 2.2e-160 569.7 476 63.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 3.8e-160 568.9 467 63.4
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 6.5e-160 568.2 500 61.2
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 8.5e-160 567.8 467 63.2
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-159 566.6 467 62.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.9e-159 566.6 467 62.7
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.5e-159 566.2 489 61.8
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 3.2e-159 565.8 467 62.5
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.6e-158 562.4 468 63.5
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 7.9e-158 561.2 476 62.4
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.9e-156 556.6 477 63.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-156 556.6 475 61.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.9e-156 556.6 482 63.5
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.5e-156 556.2 477 62.7
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 9.7e-156 554.3 495 60.4
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.8e-155 552.0 476 61.8
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 6.3e-155 551.6 477 62.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 8.2e-155 551.2 431 65.7
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.1e-154 549.3 476 62.6
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 4.1e-154 548.9 489 60.7
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 4.5e-153 545.4 499 59.9
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 7.7e-153 544.7 475 62.1
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.3e-152 543.9 446 63.0
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.2e-150 537.3 475 61.5
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 5.1e-149 531.9 476 61.1
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.7e-147 526.9 425 64.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 9.1e-146 521.2 473 59.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.7e-144 516.9 417 65.5
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 3.8e-144 515.8 521 55.9
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.6e-142 509.2 488 57.8
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.0e-141 507.7 458 61.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.1e-140 504.2 482 55.6
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.6e-140 503.1 499 56.5
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 7.2e-135 485.0 364 70.1
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.3e-130 468.8 311 74.3
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.2e-129 467.6 476 55.7
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 8.0e-126 454.9 485 51.8
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 8.0e-126 454.9 319 71.8
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.8e-123 446.4 500 53.4
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.3e-123 445.3 485 51.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.0e-121 440.3 418 58.4
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 7.2e-119 431.8 309 72.5
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 7.2e-119 431.8 373 63.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.9e-115 419.1 425 53.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.0e-100 370.5 331 60.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.1e-98 362.8 213 88.7
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 3.9e-96 356.3 305 59.7
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-94 351.3 212 83.5
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-94 351.3 212 83.5
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.1e-90 338.2 352 54.5
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.9e-90 337.4 211 81.0
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 5.4e-90 335.9 355 52.1
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.0e-84 317.4 350 53.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.9e-82 310.8 272 59.9
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 6.0e-81 305.8 400 47.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.0e-81 305.8 249 63.1
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-77 294.3 162 90.7
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 2.9e-75 287.0 335 50.4
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.7e-72 277.7 468 38.0
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.6e-70 271.2 315 51.7
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.1e-66 258.5 481 35.8
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 3.2e-58 230.3 129 85.3
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-53 212.2 520 31.7
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.7e-46 190.3 105 88.6
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 2.6e-44 184.1 440 30.9
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.2e-43 181.0 105 87.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 2.9e-43 180.6 433 33.9
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.2e-42 176.8 105 84.8
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 3.6e-41 173.7 104 84.6
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.0e-40 172.2 209 51.2
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.8e-38 163.3 87 90.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 5.5e-34 149.8 175 49.7
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.3e-27 128.6 173 44.5
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-22 111.7 122 49.2
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.6e-20 105.1 142 43.7
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.9e-19 100.9 188 33.5
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 7.2e-18 96.3 192 33.9
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.7e-17 94.4 67 71.6
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.7e-17 93.6 54 83.3
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.2e-16 90.1 57 78.9
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.0e-15 88.2 45 91.1
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.8e-14 83.6 89 48.3
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 3.1e-13 80.9 208 28.8
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.2e-10 70.9 43 74.4
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 4.2e-10 70.5 319 27.3
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 3.7e-06 57.4 159 30.2
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 4.8e-06 57.0 38 76.3


User provided reference genes

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