Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.7e-138 495.0 266 100.0
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.4e-91 338.6 239 74.5
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.3e-87 327.0 241 73.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.6e-87 324.3 247 72.1
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.5e-86 322.8 247 71.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 5.6e-86 321.6 270 67.4
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 9.5e-86 320.9 247 68.0
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.6e-85 320.1 247 68.8
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.1e-85 319.7 247 68.8
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.8e-85 319.3 247 68.0
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.8e-85 319.3 245 71.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 2.8e-85 319.3 237 71.3
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.8e-85 319.3 247 68.4
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 4.7e-85 318.5 235 72.8
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.4e-84 317.0 247 68.8
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.4e-84 317.0 247 68.0
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.4e-84 317.0 233 73.4
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 5.2e-84 315.1 240 71.2
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.4e-83 312.4 269 65.1
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 3.4e-83 312.4 247 68.0
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.8e-83 311.6 275 64.4
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.8e-83 311.6 275 64.4
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 9.9e-83 310.8 250 68.8
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 9.9e-83 310.8 248 69.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.3e-82 310.5 247 68.8
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 8.3e-82 307.8 250 68.8
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 3.2e-81 305.8 225 74.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 5.4e-81 305.1 248 71.0
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 7.1e-81 304.7 246 67.5
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.1e-81 304.7 246 67.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.1e-81 304.7 246 67.5
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 9.2e-81 304.3 245 69.0
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 1.6e-80 303.5 270 63.0
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 3.5e-80 302.4 246 66.3
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.8e-80 301.2 246 67.1
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-79 300.8 246 67.1
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.3e-79 300.4 250 67.2
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.7e-79 300.1 250 67.6
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.9e-79 298.9 248 67.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 5.6e-78 295.0 247 65.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 7.3e-78 294.7 256 64.1
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 2.1e-77 293.1 243 68.7
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.1e-77 293.1 246 65.9
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.1e-76 290.8 255 66.3
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.4e-76 289.7 244 66.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.4e-76 289.7 247 64.0
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 4.0e-76 288.9 256 64.1
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 5.2e-76 288.5 246 65.4
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.5e-75 287.0 248 67.3
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 4.4e-75 285.4 270 62.6
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 5.8e-75 285.0 225 68.4
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 4.9e-74 282.0 287 58.9
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.9e-74 282.0 255 62.7
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.4e-73 279.6 240 65.4
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 6.0e-72 275.0 249 63.9
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.0e-72 275.0 245 62.9
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 5.1e-71 271.9 250 64.4
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.2e-69 267.3 258 57.8
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.2e-69 267.3 224 67.4
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 8.1e-69 264.6 250 62.0
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.4e-68 263.8 247 62.3
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.8e-68 263.5 248 61.7
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.8e-68 263.5 212 67.9
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.1e-68 262.7 252 58.3
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 5.2e-68 261.9 252 58.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.0e-67 260.0 274 56.9
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 2.0e-67 260.0 211 66.8
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 5.8e-67 258.5 224 66.1
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 9.9e-67 257.7 212 66.5
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.9e-66 256.1 247 59.5
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.4e-65 253.1 245 61.2
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.5e-62 243.8 244 59.0
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.9e-62 243.4 233 62.2
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.9e-62 243.4 246 59.3
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 5.6e-62 241.9 245 60.4
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.3e-61 240.7 233 61.8
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.6e-61 240.4 260 56.5
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.1e-61 240.0 239 59.0
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 3.1e-60 236.1 266 56.4
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.6e-59 233.0 190 67.4
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.2e-57 226.1 262 58.8
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 4.2e-57 225.7 251 55.0
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.6e-56 223.8 250 54.4
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.7e-56 223.0 220 58.6
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 3.5e-56 222.6 249 53.8
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 7.9e-56 221.5 190 63.7
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.3e-55 219.9 254 54.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.3e-55 219.9 206 61.2
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 3.0e-55 219.5 192 64.6
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 8.7e-55 218.0 195 63.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 4.3e-54 215.7 224 58.5
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.6e-53 213.8 212 59.4
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 8.1e-53 211.5 252 53.2
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.8e-52 210.3 403 39.5
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.5e-51 207.2 244 53.3
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 9.9e-51 204.5 247 53.8
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 4.9e-50 202.2 243 53.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.4e-49 200.7 199 58.8
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.4e-49 199.9 188 59.6
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 3.2e-49 199.5 247 52.6
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 3.2e-49 199.5 247 52.6
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.2e-49 199.5 224 54.0
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.5e-49 198.7 224 53.1
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.9e-46 190.3 225 50.7
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 2.5e-46 189.9 248 50.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 2.5e-46 189.9 248 50.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 2.5e-46 189.9 248 50.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 7.4e-46 188.3 246 50.8
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.8e-44 183.7 180 60.6
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 4.9e-42 175.6 231 48.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 6.5e-42 175.3 189 56.6
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.6e-40 170.6 271 44.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.0e-40 168.7 192 52.6
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 6.0e-40 168.7 242 47.5
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.1e-38 164.5 222 51.4
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 4.5e-35 152.5 203 47.3
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.6e-32 144.1 153 56.2
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.0e-31 139.8 190 48.4
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 7.2e-25 118.6 221 43.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.6e-24 117.5 127 58.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.0e-23 113.2 182 42.9
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 9.7e-22 108.2 200 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 2.4e-20 103.6 202 39.1
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 9.4e-17 91.7 50 86.0
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.0e-15 86.7 148 44.6
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 2.2e-13 80.5 167 40.1
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-11 74.7 49 71.4
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.9e-10 70.1 47 72.3
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 8.5e-10 68.6 78 52.6
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.1e-09 68.2 51 62.7
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 8.0e-08 62.0 90 41.1
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 3.0e-07 60.1 51 60.8
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 2.0e-06 57.4 43 67.4


User provided reference genes

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