Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A19G23 Lonicera japonica HOM05D004995 ORTHO05D006034 0.0e+00 2302.3 1166 100.0
Dinv10081 Davidia involucrata HOM05D004995 ORTHO05D006034 7.5e-268 927.9 1316 46.0
CSS0012776 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.8e-266 923.3 1344 44.9
CSS0035665 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 5.9e-265 918.3 1344 44.8
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 1.6e-246 857.1 1346 42.9
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 3.5e-233 812.8 1293 42.4
Rhsim01G0290000 Rhododendron simsii HOM05D004995 ORTHO05D006034 6.0e-233 812.0 1312 41.3
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 1.7e-219 767.3 1332 40.0
Lsat_1_v5_gn_8_165441 Lactuca sativa HOM05D004995 ORTHO05D006034 2.7e-217 760.0 1256 40.4
Cc02_g27310 Coffea canephora HOM05D004995 ORTHO05D006034 7.8e-217 758.4 1294 39.7
Dinv33107 Davidia involucrata HOM05D004995 ORTHO05D006034 2.5e-215 753.4 1207 42.1
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 1.2e-212 744.6 1319 39.3
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 2.6e-212 743.4 1323 38.8
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 3.4e-212 743.0 1362 38.5
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 3.4e-212 743.0 1331 39.4
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 1.7e-211 740.7 1285 40.8
Peaxi162Scf00058g03010 Petunia axillaris HOM05D004995 ORTHO05D006034 1.9e-210 737.3 1265 39.5
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 2.7e-209 733.4 1328 38.4
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 1.7e-208 730.7 1365 37.9
Manes.01G226600 Manihot esculenta HOM05D004995 ORTHO05D006034 6.6e-208 728.8 1316 39.4
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 1.1e-207 728.0 1262 39.5
HanXRQChr06g0167831 Helianthus annuus HOM05D004995 ORTHO05D006034 1.9e-207 727.2 1192 40.9
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 1.9e-207 727.2 1504 36.6
Sabra14G0090800 Salix brachista HOM05D004995 ORTHO05D006034 1.9e-207 727.2 1325 38.1
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 4.3e-207 726.1 1337 39.1
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 2.1e-206 723.8 1343 38.6
CiPaw.07G116000 Carya illinoinensis HOM05D004995 ORTHO05D006034 6.2e-206 722.2 1293 38.4
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 1.8e-205 720.7 1445 36.8
Sabra02G0160100 Salix brachista HOM05D004995 ORTHO05D006034 2.4e-205 720.3 1256 39.4
TWI75G0138 Tripterygium wilfordii HOM05D004995 ORTHO05D006034 4.0e-205 719.5 1330 38.6
Cpa.g.sc18.23 Carica papaya HOM05D004995 ORTHO05D006034 9.0e-205 718.4 1320 38.0
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 2.0e-204 717.2 1401 37.5
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 3.8e-203 713.0 1336 37.7
SGA_v2.0_scaffold376G50269 Striga asiatica HOM05D004995 ORTHO05D006034 7.1e-202 708.8 1318 37.5
Ciclev10024590m.g Citrus clementina HOM05D004995 ORTHO05D006034 2.1e-201 707.2 1403 37.5
DCAR_012367 Daucus carota HOM05D004995 ORTHO05D006034 8.7e-200 701.8 1394 36.4
Sc24g0003210 Simmondsia chinensis HOM05D004995 ORTHO05D006034 1.6e-198 697.6 1295 39.2
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 3.7e-198 696.4 1330 37.4
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 6.2e-198 695.7 1435 35.8
Nitab4.5_0006144g0040 Nicotiana tabacum HOM05D004995 ORTHO05D006034 2.4e-197 693.7 1520 34.5
Nitab4.5_0000363g0330 Nicotiana tabacum HOM05D004995 ORTHO05D006034 3.4e-196 689.9 1425 35.8
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 6.4e-195 685.6 1332 37.6
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 2.5e-194 683.7 1352 36.8
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 4.2e-194 682.9 1335 36.7
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 4.2e-194 682.9 1328 36.7
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 1.5e-191 674.5 1416 37.1
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 3.3e-191 673.3 1374 36.1
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 4.3e-191 672.9 1402 36.2
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 3.7e-190 669.8 1174 40.6
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 1.1e-189 668.3 1335 36.3
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 9.0e-189 665.2 1304 37.1
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 3.4e-188 663.3 1463 33.8
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 3.0e-184 650.2 1496 34.7
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 1.9e-183 647.5 1429 34.7
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 5.7e-183 646.0 1470 33.3
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 9.7e-183 645.2 1318 36.4
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 2.8e-182 643.7 1455 34.0
HanXRQChr15g0464181 Helianthus annuus HOM05D004995 ORTHO05D006034 3.7e-182 643.3 1539 34.0
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 8.2e-182 642.1 1226 38.4
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 1.4e-181 641.3 1463 34.2
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 6.9e-181 639.0 1399 35.2
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.5e-180 637.9 1466 34.0
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 2.6e-180 637.1 1458 34.0
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 5.9e-180 636.0 1475 34.2
DCAR_005771 Daucus carota HOM05D004995 ORTHO05D006034 7.7e-180 635.6 1430 34.9
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 1.1e-178 631.7 1467 33.5
Gohir.A12G126200 Gossypium hirsutum HOM05D004995 ORTHO05D006034 5.5e-178 629.4 1269 36.7
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 1.2e-177 628.2 1445 33.9
Nitab4.5_0013957g0010 Nicotiana tabacum HOM05D004995 ORTHO05D006034 1.8e-176 624.4 1128 38.7
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 3.9e-176 623.2 1363 34.5
THA.LOC104825943 Tarenaya hassleriana HOM05D004995 ORTHO05D006034 6.7e-176 622.5 1392 33.9
PGSC0003DMG400009006 Solanum tuberosum HOM05D004995 ORTHO05D006034 1.2e-172 611.7 1290 36.7
Phvul.007G215300 Phaseolus vulgaris HOM05D004995 ORTHO05D006034 1.5e-172 611.3 1494 33.2
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 3.4e-172 610.1 1258 35.9
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 1.7e-171 607.8 1200 38.8
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 4.2e-170 603.2 1284 36.6
MBI18_g28452_MAGBIO Magnolia biondii HOM05D004995 ORTHO05D006034 3.0e-168 597.0 1297 34.9
PSO170G6821 Papaver somniferum HOM05D004995 ORTHO05D006034 3.0e-168 597.0 1631 31.5
PSO357G0286 Papaver somniferum HOM05D004995 ORTHO05D006034 1.9e-162 577.8 1654 30.7
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 7.2e-162 575.9 1401 34.0
EL10As5g23507 Beta vulgaris HOM05D004995 ORTHO05D006034 9.4e-162 575.5 1569 31.2
Peaxi162Scf00001g10213 Petunia axillaris HOM05D004995 ORTHO05D006034 1.2e-161 575.1 1200 36.8
unitig_90.g27435 Utricularia gibba HOM05D004995 ORTHO05D006034 2.1e-161 574.3 1255 35.1
Nitab4.5_0001301g0150 Nicotiana tabacum HOM05D004995 ORTHO05D006034 1.4e-160 571.6 1164 36.9
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 9.7e-159 565.5 1320 33.0
Ah.11g049350 Amaranthus hybridus HOM05D004995 ORTHO05D006034 1.7e-158 564.7 1479 31.6
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 1.4e-149 535.0 1548 30.9
AUR62011830 Chenopodium quinoa HOM05D004995 ORTHO05D006034 2.4e-149 534.3 1618 29.5
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 5.0e-147 526.6 1417 31.3
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 1.1e-146 525.4 1315 32.7
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 2.7e-145 520.8 1306 32.9
FAN08G3258 Fragaria x ananassa HOM05D004995 ORTHO05D006034 6.1e-145 519.6 1346 32.8
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 1.0e-144 518.8 1307 32.7
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 1.4e-144 518.5 1334 32.0
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 1.2e-143 515.4 1316 32.0
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 2.6e-143 514.2 1410 30.9
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 1.6e-140 505.0 1402 31.2
AT4G02110 Arabidopsis thaliana HOM05D004995 ORTHO05D006034 2.7e-140 504.2 1414 32.2
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 4.5e-140 503.4 1323 31.8
GSVIVG01028102001 Vitis vinifera HOM05D004995 ORTHO05D006034 1.3e-139 501.9 328 73.5
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 7.2e-138 496.1 1386 30.1
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 2.0e-135 488.0 1441 30.6
MELO3C015934.2 Cucumis melo HOM05D004995 ORTHO05D006034 9.8e-135 485.7 1348 30.9
vmacro15117 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 1.8e-133 481.5 325 68.9
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.7e-131 474.9 1539 28.3
AUR62024673 Chenopodium quinoa HOM05D004995 ORTHO05D006034 7.0e-125 453.0 501 47.5
MD11G1316200 Malus domestica HOM05D004995 ORTHO05D006034 1.1e-122 445.7 381 58.3
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 1.1e-117 429.1 1115 32.5
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 1.2e-111 409.1 1575 26.6
CDE09G0507 Ceratophyllum demersum HOM05D004995 ORTHO05D006034 5.8e-111 406.8 360 53.9
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 1.2e-103 382.5 1378 26.6
SEGI_38340 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 4.9e-102 377.1 318 53.5
Eucgr.K03537 Eucalyptus grandis HOM05D004995 ORTHO05D006034 3.0e-91 341.3 256 60.5
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 3.0e-83 314.7 1093 28.2
SHI20082 Sapria himalayana HOM05D004995 ORTHO05D006034 3.3e-82 311.2 263 55.9
HanXRQChr05g0136031 Helianthus annuus HOM05D004995 ORTHO05D006034 4.8e-81 307.4 229 63.3
Zm00001eb331400 Zea mays HOM05D004995 ORTHO05D006034 8.2e-73 280.0 1250 26.8
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 2.4e-64 251.9 337 38.9
CBR_g29774 Chara braunii HOM05D004995 ORTHO05D006034 1.2e-60 239.6 499 32.9
HPP92_002052 Vanilla planifolia HOM05D004995 ORTHO05D006034 1.2e-60 239.6 186 59.7
HPP92_002051 Vanilla planifolia HOM05D004995 ORTHO05D006034 7.7e-55 220.3 532 32.0
MD11G1316300 Malus domestica HOM05D004995 ORTHO05D006034 5.7e-50 204.1 545 31.6
TAR633G1331 Trochodendron aralioides HOM05D004995 ORTHO05D006034 3.8e-38 164.9 129 56.6
Aa31LG5G1760 Aethionema arabicum HOM05D004995 ORTHO05D006034 1.5e-29 136.3 120 50.8
CARHR293070 Cardamine hirsuta HOM05D004995 ORTHO05D006034 5.2e-27 127.9 254 34.3
vmacro15118 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 8.8e-27 127.1 94 66.0
SHI20084 Sapria himalayana HOM05D004995 ORTHO05D006034 1.2e-26 126.7 91 65.9
MD11G1233500 Malus domestica HOM05D004995 ORTHO05D006034 2.0e-26 125.9 86 64.0
CBR_g16825 Chara braunii HOM05D018838 ORTHO05D006034 2.3e-22 112.5 141 40.4
SHI20083 Sapria himalayana HOM05D004995 ORTHO05D006034 2.1e-20 105.9 58 86.2
RcHm_v2.0_Chr3g0497341 Rosa chinensis HOM05D004995 ORTHO05D006034 1.0e-19 103.6 200 34.5
CAN.G74.2 Capsicum annuum HOM05D004995 ORTHO05D002292 1.8e-19 102.8 73 60.3
CDE09G0607 Ceratophyllum demersum HOM05D004995 ORTHO05D006034 9.8e-18 97.1 90 50.0
Zm00001eb333180 Zea mays HOM05D004995 ORTHO05D006034 1.7e-17 96.3 63 68.3
Zm00001eb309400 Zea mays HOM05D004995 ORTHO05D006034 6.4e-17 94.4 63 66.7
Os07g0689950 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.1e-16 93.6 198 33.3
HanXRQChr15g0473761 Helianthus annuus HOM05D004995 ORTHO05D006034 2.8e-12 79.0 83 48.2
MCO11G651 Micromonas commoda HOM05D004995 ORTHO05D007715 4.4e-10 71.6 222 29.3
SEGI_18199 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 7.5e-10 70.9 56 57.1
ECA233G6055 Erigeron canadensis HOM05D008775 ORTHO05D000004 4.9e-09 68.2 77 46.8
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 4.1e-08 65.1 163 27.0
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 2.0e-07 62.8 110 30.9
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 3.5e-07 62.0 141 26.2
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 4.6e-07 61.6 131 29.8
SEGI_28504 Sequoiadendron giganteum HOM05D000001 ORTHO05D002182 4.6e-07 61.6 184 24.5
CAN.G224.3 Capsicum annuum HOM05D003804 ORTHO05D004350 7.8e-07 60.8 47 63.8
Lsat_1_v5_gn_4_70341 Lactuca sativa HOM05D004995 ORTHO05D011291 7.8e-07 60.8 43 62.8
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 7.8e-07 60.8 151 26.5
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.0e-06 60.5 137 28.5
CBR_g39265 Chara braunii HOM05D000001 ORTHO05D002182 1.3e-06 60.1 161 25.5
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 1.7e-06 59.7 111 32.4
PSO063G3931 Papaver somniferum HOM05D000001 ORTHO05D002182 1.7e-06 59.7 135 28.9
Hund05474 Selenicereus undatus HOM05D000001 ORTHO05D002182 2.3e-06 59.3 121 32.2
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 3.0e-06 58.9 165 27.9
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 6.6e-06 57.8 131 28.2
CARHR003370 Cardamine hirsuta HOM05D000001 ORTHO05D002182 8.6e-06 57.4 124 30.6
MD10G1178800 Malus domestica HOM05D000001 ORTHO05D002182 8.6e-06 57.4 125 30.4
Peaxi162Scf01157g00215 Petunia axillaris HOM05D000001 ORTHO05D002182 8.6e-06 57.4 186 25.8
SMO143G0028 Selaginella moellendorffii HOM05D000001 ORTHO05D002182 8.6e-06 57.4 159 27.7


User provided reference genes

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