Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 1.2e-149 533.1 263 100.0
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.1e-118 430.3 255 82.4
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 2.7e-117 425.6 252 82.1
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 1.5e-112 409.8 255 77.3
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 1.7e-111 406.4 253 77.9
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.1e-110 403.7 228 83.3
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 3.6e-109 398.7 260 76.9
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 3.6e-109 398.7 228 82.9
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 1.8e-108 396.4 252 76.6
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.5e-107 393.3 260 73.1
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 4.3e-107 391.7 252 76.2
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 5.7e-107 391.3 254 76.0
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 9.7e-107 390.6 256 76.2
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 1.6e-106 389.8 254 73.2
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 8.2e-106 387.5 225 82.7
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.1e-105 387.1 231 81.8
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.4e-105 386.7 250 76.8
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 1.4e-105 386.7 229 82.5
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 1.4e-105 386.7 229 82.5
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 1.8e-105 386.3 253 76.7
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 4.1e-105 385.2 245 76.7
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 5.3e-105 384.8 255 76.1
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.9e-105 384.4 259 75.3
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 9.1e-105 384.0 232 81.5
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.2e-104 383.6 259 75.3
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.2e-104 383.6 228 80.7
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 1.2e-104 383.6 251 74.1
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.2e-104 383.6 255 75.3
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 2.0e-104 382.9 231 81.0
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.6e-104 382.5 255 75.3
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 5.9e-104 381.3 233 79.4
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.9e-103 379.0 240 77.9
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 3.8e-103 378.6 252 75.0
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 5.0e-103 378.3 258 68.6
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 1.9e-102 376.3 228 80.7
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 1.9e-102 376.3 228 80.7
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 3.2e-102 375.6 237 76.4
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 3.2e-102 375.6 251 74.1
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 4.2e-102 375.2 252 71.4
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 5.5e-102 374.8 233 78.5
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 5.5e-102 374.8 237 78.1
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 5.5e-102 374.8 249 74.7
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 9.4e-102 374.0 237 78.5
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 9.4e-102 374.0 256 71.5
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.6e-101 373.2 233 79.4
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 1.6e-101 373.2 231 79.2
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 2.7e-101 372.5 249 74.3
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.7e-101 372.5 230 80.0
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 3.6e-101 372.1 234 77.4
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 4.6e-101 371.7 214 84.1
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 6.1e-101 371.3 259 69.1
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 6.1e-101 371.3 230 79.1
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 7.9e-101 370.9 249 71.9
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 7.9e-101 370.9 252 70.6
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.0e-100 370.5 230 79.6
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.8e-100 369.8 230 79.1
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.8e-100 369.8 240 76.7
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 3.0e-100 369.0 247 71.7
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 3.0e-100 369.0 233 76.8
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 6.7e-100 367.9 228 77.2
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 8.8e-100 367.5 230 79.1
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 8.8e-100 367.5 245 74.3
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 8.8e-100 367.5 228 78.9
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 1.1e-99 367.1 253 72.7
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 1.1e-99 367.1 227 77.1
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 2.6e-99 365.9 212 84.0
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 2.6e-99 365.9 212 84.0
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 2.6e-99 365.9 251 70.5
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 5.7e-99 364.8 251 70.1
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 5.7e-99 364.8 260 71.2
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 5.7e-99 364.8 253 70.4
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 5.7e-99 364.8 263 71.1
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.3e-98 363.6 230 77.4
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 1.3e-98 363.6 253 71.5
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 1.7e-98 363.2 251 70.9
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 1.7e-98 363.2 251 69.7
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 2.8e-98 362.5 251 70.1
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 2.8e-98 362.5 256 71.5
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 3.7e-98 362.1 260 71.2
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 3.7e-98 362.1 212 80.2
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 6.3e-98 361.3 212 82.5
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 8.2e-98 360.9 254 70.5
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 5.3e-97 358.2 251 71.3
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.6e-96 355.9 251 71.3
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.6e-96 355.9 228 76.8
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 3.4e-96 355.5 225 77.3
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 4.5e-96 355.1 210 82.4
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 5.9e-96 354.8 254 70.5
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 1.0e-95 354.0 252 70.2
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 1.9e-94 349.7 210 79.0
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 1.9e-94 349.7 210 79.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 3.2e-94 349.0 234 70.9
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 7.2e-94 347.8 257 67.3
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 9.4e-94 347.4 255 69.8
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 2.1e-93 346.3 254 68.9
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 2.7e-93 345.9 255 69.8
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.6e-93 345.5 256 67.2
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 4.7e-93 345.1 242 70.2
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 8.8e-92 340.9 207 80.2
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 2.6e-91 339.3 254 67.3
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 9.7e-91 337.4 230 74.3
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.8e-90 335.9 258 65.9
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 6.3e-90 334.7 252 65.5
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-89 334.0 362 52.2
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 2.4e-89 332.8 249 64.3
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 3.1e-89 332.4 211 75.8
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 4.5e-88 328.6 226 71.7
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 2.2e-87 326.2 210 76.7
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 1.9e-86 323.2 318 56.3
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 3.2e-86 322.4 214 73.4
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 4.4e-83 312.0 211 70.6
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.8e-82 309.3 234 67.1
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.8e-82 308.5 216 70.4
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 1.3e-79 300.4 206 69.4
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.2e-79 299.7 173 83.2
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 5.0e-79 298.5 207 71.0
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.5e-78 295.0 173 81.5
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 1.2e-77 293.9 212 70.8
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.6e-77 293.5 169 81.7
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 3.6e-77 292.4 172 82.0
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 2.2e-74 283.1 208 66.8
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.3e-71 273.9 189 73.0
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 3.8e-71 272.3 256 55.9
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 8.3e-66 254.6 220 55.0
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-65 254.2 220 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 1.4e-65 253.8 222 52.7
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.0e-63 247.7 155 77.4
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 3.3e-62 242.7 260 48.8
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 8.9e-60 234.6 189 59.8
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 9.8e-59 231.1 172 68.6
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 5.6e-54 215.3 215 54.0
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.2e-53 214.2 117 83.8
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 4.7e-53 212.2 215 52.6
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 3.1e-52 209.5 207 48.8
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 2.2e-50 203.4 156 64.1
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 1.1e-46 191.0 138 67.4
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.8e-45 186.4 172 57.6
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.6e-43 179.9 114 78.9
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 5.4e-41 172.2 97 84.5
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 6.0e-40 168.7 201 44.3
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.5e-38 164.1 108 69.4
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.5e-38 164.1 108 69.4
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 3.3e-38 162.9 101 74.3
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.3e-38 162.5 116 69.8
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 2.9e-34 149.8 239 39.3
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 5.4e-33 145.6 191 43.5
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 2.8e-29 133.3 123 57.7
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.2e-29 132.1 88 71.6
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.3e-26 124.4 237 38.0
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 1.4e-17 94.4 62 75.8
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 6.7e-15 85.5 199 33.7
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.1e-13 80.5 104 45.2
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 6.9e-12 75.5 206 28.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 4.9e-10 69.3 205 29.8
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.1e-09 68.2 254 24.8
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.1e-09 68.2 206 27.2
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 3.2e-09 66.6 205 29.3
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 3.5e-08 63.2 243 26.3
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.3e-07 61.2 209 29.2
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 1.8e-07 60.8 132 30.3
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 3.0e-07 60.1 199 26.1
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 3.0e-07 60.1 271 27.7
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 6.7e-07 58.9 207 27.5
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.5e-06 57.8 218 25.7
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 3.3e-06 56.6 128 30.5


User provided reference genes

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