Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 5.1e-145 517.7 256 100.0
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 4.4e-96 355.1 242 69.4
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 1.8e-94 349.7 249 68.3
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 1.6e-93 346.7 249 66.7
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 2.7e-93 345.9 259 65.6
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 7.7e-93 344.4 251 66.5
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 1.7e-92 343.2 251 65.7
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 2.3e-92 342.8 251 66.9
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 5.0e-92 341.7 249 65.9
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 1.9e-91 339.7 251 66.1
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 2.5e-91 339.3 250 65.2
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 1.6e-90 336.7 251 65.3
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 2.1e-90 336.3 248 65.7
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 2.1e-90 336.3 245 65.7
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 2.8e-90 335.9 252 67.5
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 4.7e-90 335.1 249 64.7
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 6.1e-90 334.7 248 64.9
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 8.0e-90 334.3 243 65.8
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 1.0e-89 334.0 264 62.1
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 2.3e-89 332.8 260 63.5
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.0e-89 332.4 249 64.3
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.0e-89 332.0 243 65.4
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 6.8e-89 331.3 249 64.7
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 8.9e-89 330.9 249 64.3
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 2.6e-88 329.3 250 63.6
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 4.4e-88 328.6 250 63.6
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 5.7e-88 328.2 242 64.9
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.2e-87 326.2 249 62.7
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 8.3e-87 324.3 251 62.2
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.4e-86 322.8 282 58.2
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 7.0e-86 321.2 258 61.6
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 1.2e-85 320.5 227 67.8
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 1.6e-85 320.1 250 60.8
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.7e-85 319.3 249 61.0
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.7e-85 319.3 249 61.0
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 7.8e-85 317.8 286 55.9
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.0e-84 317.4 249 61.0
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 5.0e-84 315.1 249 60.6
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 8.6e-84 314.3 249 61.8
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.1e-83 313.9 249 63.1
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 4.3e-83 312.0 275 57.1
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.0e-80 303.1 317 50.2
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.4e-78 296.2 265 55.8
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 3.5e-77 292.4 259 54.1
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.0e-76 289.3 255 54.5
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 5.2e-73 278.5 207 65.7
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 2.4e-70 269.6 208 63.0
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 6.6e-68 261.5 236 56.8
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 1.4e-65 253.8 232 56.9
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 1.2e-64 250.8 212 59.9
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 2.6e-64 249.6 252 48.8
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 2.2e-63 246.5 253 49.8
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.6e-61 240.4 218 60.1
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 2.5e-59 233.0 230 53.9
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 5.6e-59 231.9 234 49.1
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 9.5e-59 231.1 253 49.0
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 6.2e-58 228.4 196 58.7
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 1.1e-57 227.6 215 54.0
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 5.8e-56 221.9 173 61.8
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 1.3e-55 220.7 181 60.2
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 4.6e-53 212.2 142 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 7.3e-51 204.9 251 45.0
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 7.3e-51 204.9 251 42.2
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.4e-49 199.9 251 43.4
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.4e-49 199.9 251 43.8
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 4.0e-49 199.1 145 64.8
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 1.5e-48 197.2 163 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 3.4e-48 196.1 251 43.0
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.3e-47 194.1 251 43.0
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.3e-47 194.1 251 42.2
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.9e-47 193.0 252 42.9
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 5.6e-43 178.7 124 65.3
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 6.2e-42 175.3 201 47.3
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.3e-36 156.8 240 36.7
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.3e-36 156.8 240 36.7
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 3.0e-36 156.4 252 33.3
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.9e-36 156.0 240 35.4
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 1.3e-34 151.0 87 80.5
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 8.1e-34 148.3 87 75.9
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 3.8e-31 139.4 87 70.1
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 2.1e-29 133.7 107 60.7
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 7.9e-29 131.7 87 70.1
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 7.9e-29 131.7 87 70.1
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 1.1e-25 121.3 75 70.7
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 2.1e-21 107.1 92 52.2
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.1e-17 94.7 56 76.8
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 9.0e-17 91.7 99 53.5
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.8e-10 69.3 44 70.5


User provided reference genes

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