Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 0.0e+00 1294.3 710 100.0
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.2e-167 594.3 758 49.1
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.2e-164 584.3 756 48.9
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.2e-156 557.8 753 47.8
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 7.0e-152 542.0 737 45.9
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 6.6e-150 535.4 443 62.5
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.9e-149 533.9 757 44.9
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.1e-148 530.4 747 45.6
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 8.0e-148 528.5 744 45.8
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.3e-145 521.2 770 43.4
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 8.3e-145 518.5 743 44.3
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 5.4e-144 515.8 743 43.9
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-143 514.6 745 43.6
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.3e-142 510.4 718 46.9
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 4.7e-140 502.7 656 47.4
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.8e-139 500.7 586 48.3
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 6.8e-139 498.8 718 45.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 3.7e-137 493.0 527 54.6
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.1e-136 491.5 706 42.8
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.4e-136 490.3 738 47.2
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 4.1e-136 489.6 789 41.7
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 9.2e-136 488.4 482 55.0
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.3e-134 483.8 364 67.3
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 4.3e-133 479.6 689 44.7
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 2.8e-132 476.9 669 44.7
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.8e-132 476.9 785 40.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 5.2e-131 472.6 639 48.0
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 8.9e-131 471.9 785 41.7
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.3e-129 468.0 516 51.9
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.2e-129 467.2 368 65.5
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.7e-129 466.5 341 69.8
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 7.1e-128 462.2 750 40.9
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.2e-127 461.5 357 66.9
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 7.8e-127 458.8 684 43.9
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.7e-126 457.6 352 67.3
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 3.3e-125 453.4 522 51.5
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 4.3e-125 453.0 446 56.5
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 1.2e-124 451.4 750 42.1
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 2.1e-124 450.7 471 54.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 2.1e-124 450.7 770 40.8
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.6e-124 449.9 461 53.6
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.1e-123 448.4 520 49.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.8e-123 447.6 835 39.6
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.2e-123 446.0 448 57.4
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.2e-123 446.0 448 57.4
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 6.8e-123 445.7 448 57.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 6.8e-123 445.7 420 57.6
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-122 444.9 371 62.0
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.4e-122 443.0 446 55.8
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 4.4e-122 443.0 513 50.7
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.8e-122 442.6 448 57.4
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 5.8e-122 442.6 540 49.4
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.9e-120 437.6 790 38.2
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.4e-120 437.2 589 47.2
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 1.6e-119 434.5 731 41.0
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.1e-119 434.1 606 45.0
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.1e-119 434.1 461 53.1
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-119 434.1 397 57.9
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.7e-119 433.7 397 57.9
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.9e-117 427.6 514 47.7
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 3.3e-117 426.8 793 38.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 4.3e-117 426.4 347 63.1
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 7.3e-117 425.6 520 47.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 7.3e-117 425.6 781 38.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.2e-116 424.9 518 46.5
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.6e-116 424.5 794 39.3
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.1e-115 420.2 359 60.2
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 4.0e-115 419.9 456 51.1
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 6.9e-115 419.1 463 51.4
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 9.0e-115 418.7 590 42.7
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 9.0e-115 418.7 762 37.5
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 9.0e-115 418.7 526 46.4
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 8.4e-113 412.1 346 61.0
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 1.1e-112 411.8 661 41.3
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 9.3e-112 408.7 346 60.1
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 2.7e-111 407.1 787 37.7
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.3e-110 404.8 591 43.8
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.3e-110 404.1 479 49.7
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.1e-109 401.7 358 57.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.6e-108 397.9 760 36.7
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.6e-108 397.9 709 39.9
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.8e-108 397.1 749 38.2
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 3.8e-105 386.7 354 56.5
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 6.4e-105 386.0 360 56.9
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.4e-104 384.8 360 56.7
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.4e-104 384.8 360 56.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.4e-104 384.8 732 38.5
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.1e-103 380.9 355 57.2
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.7e-103 380.6 370 55.9
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 6.0e-103 379.4 357 56.6
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 7.9e-103 379.0 311 63.0
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.3e-102 377.5 343 59.8
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 6.7e-102 375.9 578 41.9
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.1e-99 368.6 318 58.8
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.4e-99 368.2 311 60.5
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 3.1e-99 367.1 359 54.9
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.5e-98 364.8 352 55.4
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.0e-98 364.4 359 54.9
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 2.6e-98 364.0 359 54.9
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.6e-98 364.0 359 54.9
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 3.4e-98 363.6 514 41.6
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 4.5e-98 363.2 359 54.9
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 4.2e-96 356.7 511 41.7
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 1.3e-94 351.7 434 47.0
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.0e-90 337.8 720 34.2
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 7.4e-85 319.3 723 33.2
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 8.8e-78 295.8 239 64.0
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 2.2e-76 291.2 205 69.3
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.0e-73 282.3 237 62.9
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 6.5e-73 279.6 521 39.2
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 7.0e-67 259.6 206 62.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.6e-63 248.4 271 47.6
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.0e-62 244.2 395 35.9
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.7e-61 239.2 229 51.5
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.2e-58 232.3 297 45.8
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 8.8e-54 216.1 323 41.5
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 9.1e-51 206.1 539 32.7
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 1.4e-38 165.6 227 44.9
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.2e-37 162.5 123 67.5
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 5.7e-37 160.2 168 54.2
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.1e-35 154.5 113 61.1
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.4e-30 139.0 163 47.2
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.8e-30 138.7 149 52.3
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 2.0e-26 125.2 128 47.7
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.6e-23 114.4 86 64.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.8e-22 112.1 168 34.5
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 3.1e-22 111.3 106 54.7
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.7e-20 104.4 83 61.4
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.9e-16 92.0 62 67.7
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 1.6e-15 89.0 174 29.3
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 6.2e-15 87.0 55 76.4
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 6.2e-15 87.0 55 76.4
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.1e-11 76.3 56 69.6


User provided reference genes

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