Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 6.3e-171 604.0 296 100.0
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.9e-114 416.4 307 68.7
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 4.1e-114 415.2 307 68.7
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 2.5e-111 406.0 306 68.3
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 2.3e-109 399.4 311 68.8
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 1.3e-107 393.7 293 68.6
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.9e-106 389.8 287 70.0
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 3.2e-106 389.0 289 68.5
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 2.7e-105 386.0 286 69.6
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.0e-104 384.0 284 69.0
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.1e-103 380.6 307 62.9
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 1.5e-103 380.2 293 66.6
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 2.5e-103 379.4 284 66.5
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 4.3e-103 378.6 299 63.5
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 4.3e-103 378.6 284 67.3
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 4.3e-103 378.6 284 68.7
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 5.6e-103 378.3 287 67.6
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 7.3e-103 377.9 287 67.6
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 7.3e-103 377.9 284 66.9
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 2.8e-102 375.9 284 67.6
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 6.2e-102 374.8 292 66.8
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 1.1e-101 374.0 285 67.7
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.1e-101 374.0 284 67.3
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 1.1e-101 374.0 307 63.5
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 1.4e-101 373.6 287 67.6
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.8e-101 373.2 287 66.6
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 2.3e-101 372.9 281 68.7
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 4.0e-101 372.1 286 67.1
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.2e-101 371.7 284 66.9
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 5.2e-101 371.7 284 65.1
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 3.4e-100 369.0 293 64.5
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 4.4e-100 368.6 283 67.1
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 1.3e-99 367.1 310 61.9
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 1.7e-99 366.7 279 68.1
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 2.2e-99 366.3 294 65.3
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 2.9e-99 365.9 283 66.8
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 4.9e-99 365.2 294 63.9
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 8.4e-99 364.4 289 65.1
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 1.9e-98 363.2 293 64.2
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 3.2e-98 362.5 283 66.1
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 4.1e-98 362.1 283 66.4
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 7.1e-98 361.3 293 62.8
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 9.2e-98 360.9 286 64.7
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 9.2e-98 360.9 307 62.2
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.6e-97 360.1 307 61.6
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 3.5e-97 359.0 295 64.4
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 6.0e-97 358.2 293 63.1
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 1.3e-96 357.1 286 64.7
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 2.3e-96 356.3 307 60.9
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 5.1e-96 355.1 307 60.3
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 6.6e-96 354.8 290 62.8
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.5e-95 353.6 312 59.6
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 1.5e-95 353.6 292 64.0
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 2.5e-95 352.8 308 59.7
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.5e-95 352.8 307 60.6
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 3.3e-95 352.4 306 62.4
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 9.6e-95 350.9 288 62.2
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 1.1e-93 347.4 287 61.7
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.4e-93 347.1 307 60.3
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 3.1e-93 345.9 297 61.6
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 4.0e-93 345.5 282 61.7
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 5.2e-93 345.1 284 60.9
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 6.9e-93 344.7 286 62.2
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 1.3e-91 340.5 300 60.7
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 8.4e-91 337.8 285 59.3
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 2.4e-90 336.3 339 55.5
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 2.4e-90 336.3 310 59.0
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.2e-90 335.9 282 59.2
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 7.1e-90 334.7 285 58.6
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 7.1e-90 334.7 284 63.0
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 9.3e-90 334.3 281 58.4
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 2.7e-89 332.8 280 60.0
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.7e-88 330.1 291 61.5
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 2.1e-86 323.2 285 57.2
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 4.8e-86 322.0 292 58.6
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 6.2e-86 321.6 285 57.2
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 2.4e-85 319.7 284 56.7
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 5.3e-85 318.5 285 57.2
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 5.3e-85 318.5 285 57.2
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 5.3e-85 318.5 278 60.8
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 6.9e-85 318.2 286 54.9
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 1.2e-84 317.4 285 56.5
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 9.9e-84 314.3 227 70.5
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 8.4e-83 311.2 287 59.9
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.4e-82 309.7 281 54.8
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 2.4e-82 309.7 313 52.4
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 5.4e-82 308.5 382 45.8
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 7.9e-81 304.7 289 54.0
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.5e-79 300.4 272 58.1
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 5.3e-77 292.0 439 42.8
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.7e-75 287.0 285 52.6
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.7e-73 279.6 298 51.0
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 7.4e-71 271.6 285 52.6
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 2.8e-70 269.6 228 64.0
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.4e-69 266.5 283 55.5
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 1.2e-68 264.2 255 57.3
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 7.6e-68 261.5 280 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 2.5e-66 256.5 278 49.3
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 5.5e-66 255.4 175 69.7
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 8.7e-64 248.1 283 48.1
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 4.3e-63 245.7 277 46.9
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.6e-62 243.8 225 56.4
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.7e-59 233.8 288 47.2
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 4.1e-53 212.6 192 57.3
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.1e-50 204.5 285 44.9
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 3.2e-50 203.0 169 56.8
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 7.2e-50 201.8 344 35.2
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.5e-47 194.1 183 53.0
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.4e-39 166.0 143 62.9
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 6.5e-35 152.1 158 53.2
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 7.0e-29 132.1 197 43.1
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 4.1e-21 106.3 81 58.0
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 9.1e-21 105.1 68 72.1
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 1.6e-20 104.4 71 74.6
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 3.5e-20 103.2 254 28.3
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 1.7e-19 100.9 80 57.5
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 5.5e-18 95.9 260 27.7
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 3.0e-16 90.1 69 58.0
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.4e-13 79.3 51 74.5
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 2.2e-06 57.4 39 69.2


User provided reference genes

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